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Survivin polymorphisms and susceptibility to prostate cancer: A genetic association study and an in silico analysis
Survivin is a member of the apoptosis inhibitor protein family and its polymorphisms may lead to susceptibility to cancer. The aim of this study was to investigate the possible association of c.-31G>C (rs9904341), c.454G>A (rs2071214), c.*148T>C (rs2239680) and c.*571T>C (rs1042489) poly...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Leibniz Research Centre for Working Environment and Human Factors
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6046628/ https://www.ncbi.nlm.nih.gov/pubmed/30034311 http://dx.doi.org/10.17179/excli2018-1234 |
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author | Karimian, Mohammad Aftabi, Younes Mazoochi, Tahereh Babaei, Faezeh Khamechian, Tahereh Boojari, Hossein Nikzad, Hossein |
author_facet | Karimian, Mohammad Aftabi, Younes Mazoochi, Tahereh Babaei, Faezeh Khamechian, Tahereh Boojari, Hossein Nikzad, Hossein |
author_sort | Karimian, Mohammad |
collection | PubMed |
description | Survivin is a member of the apoptosis inhibitor protein family and its polymorphisms may lead to susceptibility to cancer. The aim of this study was to investigate the possible association of c.-31G>C (rs9904341), c.454G>A (rs2071214), c.*148T>C (rs2239680) and c.*571T>C (rs1042489) polymorphisms of survivin gene with prostate cancer risk and provide some justification using in silico analysis. The 157 men with prostate cancer and 145 healthy controls were included in a case-control study. The studied polymorphisms were genotyped using PCR-RFLP method. An in silico approach was employed to show the possible effects of the polymorphisms on the survivin gene function. The study revealed that there are significant associations between c.-31CC genotype (OR= 2.29, 95 % CI= 1.20-4.37, p= 0.012), c.-31C allele (OR= 1.62, 95 % CI= 1.17-2.26, p= 0.004), c.454AG genotype (OR= 2.03, 95 % CI= 1.02-4.04, p= 0.043), and c.*148C allele (OR= 1.49, 95 % CI= 1.04-2.15, p= 0.031) with prostate cancer. Using stratified analysis, we found also significant effects of age distribution on the association of c.-31G>C with prostate cancer risk (OR= 2.10, 95 % CI= 1.08-4.10, p= 0.030). Also as a preliminary study, it was shown that smoking status has significant effects on the association of c.-31G>C (OR= 1.94, 95 % CI= 1.08-3.49, p= 0.027) and c.*148T>C (OR= 2.60, 95 % CI= 1.47-4.60, p= 0.001) polymorphisms with prostate cancer risk. Finally, in silico analysis revealed that c.-31G>C, which is located in a CpG island of the promoter may change transcriptional regulation of survivin gene and c.454G>A and *148T>C could affect protein structure and possible miRNA interaction with 3'-UTR of survivin transcript respectively. According to the results, c.-31G>C, c.454G>A, and c.*148T>C polymorphisms could be genetic risk factors for prostate cancer in an Iranian population. However, further studies with larger sample size and different ethnicities are required to obtain more comprehensive results. |
format | Online Article Text |
id | pubmed-6046628 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Leibniz Research Centre for Working Environment and Human Factors |
record_format | MEDLINE/PubMed |
spelling | pubmed-60466282018-07-20 Survivin polymorphisms and susceptibility to prostate cancer: A genetic association study and an in silico analysis Karimian, Mohammad Aftabi, Younes Mazoochi, Tahereh Babaei, Faezeh Khamechian, Tahereh Boojari, Hossein Nikzad, Hossein EXCLI J Original Article Survivin is a member of the apoptosis inhibitor protein family and its polymorphisms may lead to susceptibility to cancer. The aim of this study was to investigate the possible association of c.-31G>C (rs9904341), c.454G>A (rs2071214), c.*148T>C (rs2239680) and c.*571T>C (rs1042489) polymorphisms of survivin gene with prostate cancer risk and provide some justification using in silico analysis. The 157 men with prostate cancer and 145 healthy controls were included in a case-control study. The studied polymorphisms were genotyped using PCR-RFLP method. An in silico approach was employed to show the possible effects of the polymorphisms on the survivin gene function. The study revealed that there are significant associations between c.-31CC genotype (OR= 2.29, 95 % CI= 1.20-4.37, p= 0.012), c.-31C allele (OR= 1.62, 95 % CI= 1.17-2.26, p= 0.004), c.454AG genotype (OR= 2.03, 95 % CI= 1.02-4.04, p= 0.043), and c.*148C allele (OR= 1.49, 95 % CI= 1.04-2.15, p= 0.031) with prostate cancer. Using stratified analysis, we found also significant effects of age distribution on the association of c.-31G>C with prostate cancer risk (OR= 2.10, 95 % CI= 1.08-4.10, p= 0.030). Also as a preliminary study, it was shown that smoking status has significant effects on the association of c.-31G>C (OR= 1.94, 95 % CI= 1.08-3.49, p= 0.027) and c.*148T>C (OR= 2.60, 95 % CI= 1.47-4.60, p= 0.001) polymorphisms with prostate cancer risk. Finally, in silico analysis revealed that c.-31G>C, which is located in a CpG island of the promoter may change transcriptional regulation of survivin gene and c.454G>A and *148T>C could affect protein structure and possible miRNA interaction with 3'-UTR of survivin transcript respectively. According to the results, c.-31G>C, c.454G>A, and c.*148T>C polymorphisms could be genetic risk factors for prostate cancer in an Iranian population. However, further studies with larger sample size and different ethnicities are required to obtain more comprehensive results. Leibniz Research Centre for Working Environment and Human Factors 2018-05-18 /pmc/articles/PMC6046628/ /pubmed/30034311 http://dx.doi.org/10.17179/excli2018-1234 Text en Copyright © 2018 Karimian et al. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Licence (http://creativecommons.org/licenses/by/4.0/) You are free to copy, distribute and transmit the work, provided the original author and source are credited. |
spellingShingle | Original Article Karimian, Mohammad Aftabi, Younes Mazoochi, Tahereh Babaei, Faezeh Khamechian, Tahereh Boojari, Hossein Nikzad, Hossein Survivin polymorphisms and susceptibility to prostate cancer: A genetic association study and an in silico analysis |
title | Survivin polymorphisms and susceptibility to prostate cancer: A genetic association study and an in silico analysis |
title_full | Survivin polymorphisms and susceptibility to prostate cancer: A genetic association study and an in silico analysis |
title_fullStr | Survivin polymorphisms and susceptibility to prostate cancer: A genetic association study and an in silico analysis |
title_full_unstemmed | Survivin polymorphisms and susceptibility to prostate cancer: A genetic association study and an in silico analysis |
title_short | Survivin polymorphisms and susceptibility to prostate cancer: A genetic association study and an in silico analysis |
title_sort | survivin polymorphisms and susceptibility to prostate cancer: a genetic association study and an in silico analysis |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6046628/ https://www.ncbi.nlm.nih.gov/pubmed/30034311 http://dx.doi.org/10.17179/excli2018-1234 |
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