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Uncovering the Genomic Origins of Life
The Origin of Life Domain (OLD) is the period during which life on Earth began. Here, we derive and use a new phylogenetic algorithm to analyze Protein Families in order to reconstruct the chronological steps by which the OLD evolved. During this period, life began with the appearance of the fundame...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6047450/ https://www.ncbi.nlm.nih.gov/pubmed/29947758 http://dx.doi.org/10.1093/gbe/evy129 |
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author | Lake, James A Larsen, Joseph Tran, Dan Thy Sinsheimer, Janet S |
author_facet | Lake, James A Larsen, Joseph Tran, Dan Thy Sinsheimer, Janet S |
author_sort | Lake, James A |
collection | PubMed |
description | The Origin of Life Domain (OLD) is the period during which life on Earth began. Here, we derive and use a new phylogenetic algorithm to analyze Protein Families in order to reconstruct the chronological steps by which the OLD evolved. During this period, life began with the appearance of the fundamental components of life such as RNAs, DNAs, amino acids, and membranes. Chronologically, the Origin of Life preceded the Last Universal Common Ancestor, which then subsequently engendered modern life on Earth. Our phylogenetic algorithm allows us to explicitly answer previously unknown origin of life questions. Specifically, we explain and illustrate our computational methods by reconstructing the rings describing the evolution of the RNA and DNA worlds. We phylogenetically reconstruct how the RNA and DNA worlds evolved, infer the origins and chronological order of appearance of the first genetic codes, test whether the Ribosomal RNA world preceded the Membrane world, and interpret these new findings with respect to the experimental and theoretical origin of life studies by others. |
format | Online Article Text |
id | pubmed-6047450 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-60474502018-07-19 Uncovering the Genomic Origins of Life Lake, James A Larsen, Joseph Tran, Dan Thy Sinsheimer, Janet S Genome Biol Evol Research Article The Origin of Life Domain (OLD) is the period during which life on Earth began. Here, we derive and use a new phylogenetic algorithm to analyze Protein Families in order to reconstruct the chronological steps by which the OLD evolved. During this period, life began with the appearance of the fundamental components of life such as RNAs, DNAs, amino acids, and membranes. Chronologically, the Origin of Life preceded the Last Universal Common Ancestor, which then subsequently engendered modern life on Earth. Our phylogenetic algorithm allows us to explicitly answer previously unknown origin of life questions. Specifically, we explain and illustrate our computational methods by reconstructing the rings describing the evolution of the RNA and DNA worlds. We phylogenetically reconstruct how the RNA and DNA worlds evolved, infer the origins and chronological order of appearance of the first genetic codes, test whether the Ribosomal RNA world preceded the Membrane world, and interpret these new findings with respect to the experimental and theoretical origin of life studies by others. Oxford University Press 2018-06-27 /pmc/articles/PMC6047450/ /pubmed/29947758 http://dx.doi.org/10.1093/gbe/evy129 Text en © The Author(s) 2018. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Research Article Lake, James A Larsen, Joseph Tran, Dan Thy Sinsheimer, Janet S Uncovering the Genomic Origins of Life |
title | Uncovering the Genomic Origins of Life |
title_full | Uncovering the Genomic Origins of Life |
title_fullStr | Uncovering the Genomic Origins of Life |
title_full_unstemmed | Uncovering the Genomic Origins of Life |
title_short | Uncovering the Genomic Origins of Life |
title_sort | uncovering the genomic origins of life |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6047450/ https://www.ncbi.nlm.nih.gov/pubmed/29947758 http://dx.doi.org/10.1093/gbe/evy129 |
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