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Identification and characterization of the bZIP transcription factor family and its expression in response to abiotic stresses in sesame
Basic leucine zipper (bZIP) gene family is one of the largest transcription factor families in plants, and members of this family play important roles in multiple biological processes such as light signaling, seed maturation, flower development as well as abiotic and biotic stress responses. Nonethe...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6047817/ https://www.ncbi.nlm.nih.gov/pubmed/30011333 http://dx.doi.org/10.1371/journal.pone.0200850 |
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author | Wang, Yanyan Zhang, Yujuan Zhou, Rong Dossa, Komivi Yu, Jingyin Li, Donghua Liu, Aili Mmadi, Marie Ali Zhang, Xiurong You, Jun |
author_facet | Wang, Yanyan Zhang, Yujuan Zhou, Rong Dossa, Komivi Yu, Jingyin Li, Donghua Liu, Aili Mmadi, Marie Ali Zhang, Xiurong You, Jun |
author_sort | Wang, Yanyan |
collection | PubMed |
description | Basic leucine zipper (bZIP) gene family is one of the largest transcription factor families in plants, and members of this family play important roles in multiple biological processes such as light signaling, seed maturation, flower development as well as abiotic and biotic stress responses. Nonetheless, genome-wide comprehensive analysis of the bZIP family is lacking in the important oil crop sesame. In the present study, 63 bZIP genes distributed on 14 linkage groups were identified in sesame, and denominated as SibZIP01-SibZIP63. Besides, all members of SibZIP family were divided into nine groups based on the phylogenetic relationship of Arabidopsis bZIPs, which was further supported by the analysis of their conserved motifs and gene structures. Promoter analysis showed that all SibZIP genes harbor cis-elements related to stress responsiveness in their promoter regions. Expression analyses of SibZIP genes based on transcriptome data showed that these genes have different expression patterns in different tissues. Additionally, we showed that a majority of SibZIPs (85.71%) exhibited significant transcriptional changes in responses to abiotic stresses, including drought, waterlogging, osmotic, salt, and cold, suggesting that SibZIPs may play a cardinal role in the regulation of stress responses in sesame. Together, these results provide new insights into stress-responsive SibZIP genes and pave the way for future studies of SibZIPs-mediated abiotic stress response in sesame. |
format | Online Article Text |
id | pubmed-6047817 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-60478172018-07-26 Identification and characterization of the bZIP transcription factor family and its expression in response to abiotic stresses in sesame Wang, Yanyan Zhang, Yujuan Zhou, Rong Dossa, Komivi Yu, Jingyin Li, Donghua Liu, Aili Mmadi, Marie Ali Zhang, Xiurong You, Jun PLoS One Research Article Basic leucine zipper (bZIP) gene family is one of the largest transcription factor families in plants, and members of this family play important roles in multiple biological processes such as light signaling, seed maturation, flower development as well as abiotic and biotic stress responses. Nonetheless, genome-wide comprehensive analysis of the bZIP family is lacking in the important oil crop sesame. In the present study, 63 bZIP genes distributed on 14 linkage groups were identified in sesame, and denominated as SibZIP01-SibZIP63. Besides, all members of SibZIP family were divided into nine groups based on the phylogenetic relationship of Arabidopsis bZIPs, which was further supported by the analysis of their conserved motifs and gene structures. Promoter analysis showed that all SibZIP genes harbor cis-elements related to stress responsiveness in their promoter regions. Expression analyses of SibZIP genes based on transcriptome data showed that these genes have different expression patterns in different tissues. Additionally, we showed that a majority of SibZIPs (85.71%) exhibited significant transcriptional changes in responses to abiotic stresses, including drought, waterlogging, osmotic, salt, and cold, suggesting that SibZIPs may play a cardinal role in the regulation of stress responses in sesame. Together, these results provide new insights into stress-responsive SibZIP genes and pave the way for future studies of SibZIPs-mediated abiotic stress response in sesame. Public Library of Science 2018-07-16 /pmc/articles/PMC6047817/ /pubmed/30011333 http://dx.doi.org/10.1371/journal.pone.0200850 Text en © 2018 Wang et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Wang, Yanyan Zhang, Yujuan Zhou, Rong Dossa, Komivi Yu, Jingyin Li, Donghua Liu, Aili Mmadi, Marie Ali Zhang, Xiurong You, Jun Identification and characterization of the bZIP transcription factor family and its expression in response to abiotic stresses in sesame |
title | Identification and characterization of the bZIP transcription factor family and its expression in response to abiotic stresses in sesame |
title_full | Identification and characterization of the bZIP transcription factor family and its expression in response to abiotic stresses in sesame |
title_fullStr | Identification and characterization of the bZIP transcription factor family and its expression in response to abiotic stresses in sesame |
title_full_unstemmed | Identification and characterization of the bZIP transcription factor family and its expression in response to abiotic stresses in sesame |
title_short | Identification and characterization of the bZIP transcription factor family and its expression in response to abiotic stresses in sesame |
title_sort | identification and characterization of the bzip transcription factor family and its expression in response to abiotic stresses in sesame |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6047817/ https://www.ncbi.nlm.nih.gov/pubmed/30011333 http://dx.doi.org/10.1371/journal.pone.0200850 |
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