Cargando…

The first plastid genome of a filamentous taxon ‘Bangia’ sp. OUCPT-01 in the Bangiales

Red algae are important primary photosynthetic organisms. The Bangiales comprise a morphologically diverse order of red algae. Until now, complete plastid genomes of the Bangiales were only mapped for foliose species. To date, no filamentous plastomes have been published. The aim of this study was t...

Descripción completa

Detalles Bibliográficos
Autores principales: Cao, Min, Bi, Guiqi, Mao, Yunxiang, Li, Guiyang, Kong, Fanna
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6048033/
https://www.ncbi.nlm.nih.gov/pubmed/30013114
http://dx.doi.org/10.1038/s41598-018-29083-5
_version_ 1783340028214116352
author Cao, Min
Bi, Guiqi
Mao, Yunxiang
Li, Guiyang
Kong, Fanna
author_facet Cao, Min
Bi, Guiqi
Mao, Yunxiang
Li, Guiyang
Kong, Fanna
author_sort Cao, Min
collection PubMed
description Red algae are important primary photosynthetic organisms. The Bangiales comprise a morphologically diverse order of red algae. Until now, complete plastid genomes of the Bangiales were only mapped for foliose species. To date, no filamentous plastomes have been published. The aim of this study was to determine and analyze the complete plastid genome of the filamentous marine species ‘Bangia’ sp. OUCPT-01. It is a circular molecule, 196,913 bps in length with a guanine-cytosine (GC) content of 33.5%. It has a quadripartite structure with two single copy regions separated by two direct non-identical repeats. It has 205 protein-coding genes, 37 tRNAs, and 6 rRNAs. Therefore, it has a high coding capacity and is highly similar to other Bangiales species in terms of content and structure. In particular, it reveals that the genera in the Bangiales have highly conserved gene content and plastome synteny. This plastome and existing data provide insights into the phylogenetic relationships among the Bangiales genera of the Rhodophyta. According to its plastid- and mitochondrial genomes, ‘Bangia 2′ is a sister group to Porphyra. However, the position of Wildemania schizophylla in the Bangiales is still controversial. Our results show that the Bangiales divergence time was ~225 million years ago.
format Online
Article
Text
id pubmed-6048033
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-60480332018-07-19 The first plastid genome of a filamentous taxon ‘Bangia’ sp. OUCPT-01 in the Bangiales Cao, Min Bi, Guiqi Mao, Yunxiang Li, Guiyang Kong, Fanna Sci Rep Article Red algae are important primary photosynthetic organisms. The Bangiales comprise a morphologically diverse order of red algae. Until now, complete plastid genomes of the Bangiales were only mapped for foliose species. To date, no filamentous plastomes have been published. The aim of this study was to determine and analyze the complete plastid genome of the filamentous marine species ‘Bangia’ sp. OUCPT-01. It is a circular molecule, 196,913 bps in length with a guanine-cytosine (GC) content of 33.5%. It has a quadripartite structure with two single copy regions separated by two direct non-identical repeats. It has 205 protein-coding genes, 37 tRNAs, and 6 rRNAs. Therefore, it has a high coding capacity and is highly similar to other Bangiales species in terms of content and structure. In particular, it reveals that the genera in the Bangiales have highly conserved gene content and plastome synteny. This plastome and existing data provide insights into the phylogenetic relationships among the Bangiales genera of the Rhodophyta. According to its plastid- and mitochondrial genomes, ‘Bangia 2′ is a sister group to Porphyra. However, the position of Wildemania schizophylla in the Bangiales is still controversial. Our results show that the Bangiales divergence time was ~225 million years ago. Nature Publishing Group UK 2018-07-16 /pmc/articles/PMC6048033/ /pubmed/30013114 http://dx.doi.org/10.1038/s41598-018-29083-5 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Cao, Min
Bi, Guiqi
Mao, Yunxiang
Li, Guiyang
Kong, Fanna
The first plastid genome of a filamentous taxon ‘Bangia’ sp. OUCPT-01 in the Bangiales
title The first plastid genome of a filamentous taxon ‘Bangia’ sp. OUCPT-01 in the Bangiales
title_full The first plastid genome of a filamentous taxon ‘Bangia’ sp. OUCPT-01 in the Bangiales
title_fullStr The first plastid genome of a filamentous taxon ‘Bangia’ sp. OUCPT-01 in the Bangiales
title_full_unstemmed The first plastid genome of a filamentous taxon ‘Bangia’ sp. OUCPT-01 in the Bangiales
title_short The first plastid genome of a filamentous taxon ‘Bangia’ sp. OUCPT-01 in the Bangiales
title_sort first plastid genome of a filamentous taxon ‘bangia’ sp. oucpt-01 in the bangiales
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6048033/
https://www.ncbi.nlm.nih.gov/pubmed/30013114
http://dx.doi.org/10.1038/s41598-018-29083-5
work_keys_str_mv AT caomin thefirstplastidgenomeofafilamentoustaxonbangiaspoucpt01inthebangiales
AT biguiqi thefirstplastidgenomeofafilamentoustaxonbangiaspoucpt01inthebangiales
AT maoyunxiang thefirstplastidgenomeofafilamentoustaxonbangiaspoucpt01inthebangiales
AT liguiyang thefirstplastidgenomeofafilamentoustaxonbangiaspoucpt01inthebangiales
AT kongfanna thefirstplastidgenomeofafilamentoustaxonbangiaspoucpt01inthebangiales
AT caomin firstplastidgenomeofafilamentoustaxonbangiaspoucpt01inthebangiales
AT biguiqi firstplastidgenomeofafilamentoustaxonbangiaspoucpt01inthebangiales
AT maoyunxiang firstplastidgenomeofafilamentoustaxonbangiaspoucpt01inthebangiales
AT liguiyang firstplastidgenomeofafilamentoustaxonbangiaspoucpt01inthebangiales
AT kongfanna firstplastidgenomeofafilamentoustaxonbangiaspoucpt01inthebangiales