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CNN models discriminating between pulmonary micro-nodules and non-nodules from CT images

BACKGROUND: Early and automatic detection of pulmonary nodules from CT lung screening is the prerequisite for precise management of lung cancer. However, a large number of false positives appear in order to increase the sensitivity, especially for detecting micro-nodules (diameter < 3 mm), which...

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Autores principales: Monkam, Patrice, Qi, Shouliang, Xu, Mingjie, Han, Fangfang, Zhao, Xinzhuo, Qian, Wei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6048884/
https://www.ncbi.nlm.nih.gov/pubmed/30012167
http://dx.doi.org/10.1186/s12938-018-0529-x
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author Monkam, Patrice
Qi, Shouliang
Xu, Mingjie
Han, Fangfang
Zhao, Xinzhuo
Qian, Wei
author_facet Monkam, Patrice
Qi, Shouliang
Xu, Mingjie
Han, Fangfang
Zhao, Xinzhuo
Qian, Wei
author_sort Monkam, Patrice
collection PubMed
description BACKGROUND: Early and automatic detection of pulmonary nodules from CT lung screening is the prerequisite for precise management of lung cancer. However, a large number of false positives appear in order to increase the sensitivity, especially for detecting micro-nodules (diameter < 3 mm), which increases the radiologists’ workload and causes unnecessary anxiety for the patients. To decrease the false positive rate, we propose to use CNN models to discriminate between pulmonary micro-nodules and non-nodules from CT image patches. METHODS: A total of 13,179 micro-nodules and 21,315 non-nodules marked by radiologists are extracted with three different patch sizes (16 × 16, 32 × 32 and 64 × 64) from LIDC/IDRI database and used in the experiments. Three CNN models with different depths (1, 2 or 4 convolutional layers) are designed; their performances are evaluated by the fivefold cross-validation in term of the accuracy, area under the curve (AUC), F-score and sensitivity. The network parameters are also optimized. RESULTS: It is found that the performance of the CNN models is greatly dependent on the patches size and the number of convolutional layers. The CNN model with two convolutional layers presented the best performance in case of 32 × 32 patches size, achieving an accuracy of 88.28%, an AUC of 0.87, a F-score of 83.45% and a sensitivity of 83.82%. CONCLUSIONS: The CNN models with appropriate depth and size of image patches can effectively discriminate between pulmonary micro-nodules and non-nodules, and reduce the false positives and help manage lung cancer precisely.
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spelling pubmed-60488842018-07-19 CNN models discriminating between pulmonary micro-nodules and non-nodules from CT images Monkam, Patrice Qi, Shouliang Xu, Mingjie Han, Fangfang Zhao, Xinzhuo Qian, Wei Biomed Eng Online Research BACKGROUND: Early and automatic detection of pulmonary nodules from CT lung screening is the prerequisite for precise management of lung cancer. However, a large number of false positives appear in order to increase the sensitivity, especially for detecting micro-nodules (diameter < 3 mm), which increases the radiologists’ workload and causes unnecessary anxiety for the patients. To decrease the false positive rate, we propose to use CNN models to discriminate between pulmonary micro-nodules and non-nodules from CT image patches. METHODS: A total of 13,179 micro-nodules and 21,315 non-nodules marked by radiologists are extracted with three different patch sizes (16 × 16, 32 × 32 and 64 × 64) from LIDC/IDRI database and used in the experiments. Three CNN models with different depths (1, 2 or 4 convolutional layers) are designed; their performances are evaluated by the fivefold cross-validation in term of the accuracy, area under the curve (AUC), F-score and sensitivity. The network parameters are also optimized. RESULTS: It is found that the performance of the CNN models is greatly dependent on the patches size and the number of convolutional layers. The CNN model with two convolutional layers presented the best performance in case of 32 × 32 patches size, achieving an accuracy of 88.28%, an AUC of 0.87, a F-score of 83.45% and a sensitivity of 83.82%. CONCLUSIONS: The CNN models with appropriate depth and size of image patches can effectively discriminate between pulmonary micro-nodules and non-nodules, and reduce the false positives and help manage lung cancer precisely. BioMed Central 2018-07-16 /pmc/articles/PMC6048884/ /pubmed/30012167 http://dx.doi.org/10.1186/s12938-018-0529-x Text en © The Author(s) 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research
Monkam, Patrice
Qi, Shouliang
Xu, Mingjie
Han, Fangfang
Zhao, Xinzhuo
Qian, Wei
CNN models discriminating between pulmonary micro-nodules and non-nodules from CT images
title CNN models discriminating between pulmonary micro-nodules and non-nodules from CT images
title_full CNN models discriminating between pulmonary micro-nodules and non-nodules from CT images
title_fullStr CNN models discriminating between pulmonary micro-nodules and non-nodules from CT images
title_full_unstemmed CNN models discriminating between pulmonary micro-nodules and non-nodules from CT images
title_short CNN models discriminating between pulmonary micro-nodules and non-nodules from CT images
title_sort cnn models discriminating between pulmonary micro-nodules and non-nodules from ct images
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6048884/
https://www.ncbi.nlm.nih.gov/pubmed/30012167
http://dx.doi.org/10.1186/s12938-018-0529-x
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