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Exploring hidden diversity in Southeast Asia’s Dermogenys spp. (Beloniformes: Zenarchopteridae) through DNA barcoding

Members of the freshwater halfbeak genus Dermogenys are hard to identify to the species level, despite several previous attempts to isolate fixed meristic, morphometric and colour pattern differences. This has led to ongoing confusion in scientific literature, records of species occurrence, and entr...

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Autores principales: Nurul Farhana, Samsudin, Muchlisin, Zainal Abidin, Duong, Thuy Yen, Tanyaros, Suwat, Page, Larry M., Zhao, Yahui, Adamson, Eleanor A. S., Khaironizam, Md. Zain, de Bruyn, Mark, Siti Azizah, Mohd Nor
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6050249/
https://www.ncbi.nlm.nih.gov/pubmed/30018357
http://dx.doi.org/10.1038/s41598-018-29049-7
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author Nurul Farhana, Samsudin
Muchlisin, Zainal Abidin
Duong, Thuy Yen
Tanyaros, Suwat
Page, Larry M.
Zhao, Yahui
Adamson, Eleanor A. S.
Khaironizam, Md. Zain
de Bruyn, Mark
Siti Azizah, Mohd Nor
author_facet Nurul Farhana, Samsudin
Muchlisin, Zainal Abidin
Duong, Thuy Yen
Tanyaros, Suwat
Page, Larry M.
Zhao, Yahui
Adamson, Eleanor A. S.
Khaironizam, Md. Zain
de Bruyn, Mark
Siti Azizah, Mohd Nor
author_sort Nurul Farhana, Samsudin
collection PubMed
description Members of the freshwater halfbeak genus Dermogenys are hard to identify to the species level, despite several previous attempts to isolate fixed meristic, morphometric and colour pattern differences. This has led to ongoing confusion in scientific literature, records of species occurrence, and entries in museum collections. Here, a DNA barcoding study was conducted on the genus to gain further understanding of its taxonomic status across the Southeast Asian region. Fish were collected from 33 localities, spanning freshwater and brackish habitats in Malaysia, Western Indonesia, Thailand and Vietnam. In total, 290 samples of Dermogenys spp. were amplified for a 651 base pair fragment of the mitochondrial cytochrome oxidase c subunit I (COI) gene. Analysis was able to successfully differentiate the three species: D. collettei, D. siamensis, D. sumatrana; reveal the presence of a new putative species, Dermogenys sp., that was sampled in sympatry with D. collettei at three locations; as well as uncovering two genetic lineages of a fifth species, D. bispina, that display non-overlapping geographical distributions in drainages of northern Borneo; Kudat and Sandakan. This study expands the barcode library for Zenarchopteridae, demonstrates the efficacy of DNA barcoding techniques for differentiating Dermogenys species, and the potential thereof in species discovery.
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spelling pubmed-60502492018-07-19 Exploring hidden diversity in Southeast Asia’s Dermogenys spp. (Beloniformes: Zenarchopteridae) through DNA barcoding Nurul Farhana, Samsudin Muchlisin, Zainal Abidin Duong, Thuy Yen Tanyaros, Suwat Page, Larry M. Zhao, Yahui Adamson, Eleanor A. S. Khaironizam, Md. Zain de Bruyn, Mark Siti Azizah, Mohd Nor Sci Rep Article Members of the freshwater halfbeak genus Dermogenys are hard to identify to the species level, despite several previous attempts to isolate fixed meristic, morphometric and colour pattern differences. This has led to ongoing confusion in scientific literature, records of species occurrence, and entries in museum collections. Here, a DNA barcoding study was conducted on the genus to gain further understanding of its taxonomic status across the Southeast Asian region. Fish were collected from 33 localities, spanning freshwater and brackish habitats in Malaysia, Western Indonesia, Thailand and Vietnam. In total, 290 samples of Dermogenys spp. were amplified for a 651 base pair fragment of the mitochondrial cytochrome oxidase c subunit I (COI) gene. Analysis was able to successfully differentiate the three species: D. collettei, D. siamensis, D. sumatrana; reveal the presence of a new putative species, Dermogenys sp., that was sampled in sympatry with D. collettei at three locations; as well as uncovering two genetic lineages of a fifth species, D. bispina, that display non-overlapping geographical distributions in drainages of northern Borneo; Kudat and Sandakan. This study expands the barcode library for Zenarchopteridae, demonstrates the efficacy of DNA barcoding techniques for differentiating Dermogenys species, and the potential thereof in species discovery. Nature Publishing Group UK 2018-07-17 /pmc/articles/PMC6050249/ /pubmed/30018357 http://dx.doi.org/10.1038/s41598-018-29049-7 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Nurul Farhana, Samsudin
Muchlisin, Zainal Abidin
Duong, Thuy Yen
Tanyaros, Suwat
Page, Larry M.
Zhao, Yahui
Adamson, Eleanor A. S.
Khaironizam, Md. Zain
de Bruyn, Mark
Siti Azizah, Mohd Nor
Exploring hidden diversity in Southeast Asia’s Dermogenys spp. (Beloniformes: Zenarchopteridae) through DNA barcoding
title Exploring hidden diversity in Southeast Asia’s Dermogenys spp. (Beloniformes: Zenarchopteridae) through DNA barcoding
title_full Exploring hidden diversity in Southeast Asia’s Dermogenys spp. (Beloniformes: Zenarchopteridae) through DNA barcoding
title_fullStr Exploring hidden diversity in Southeast Asia’s Dermogenys spp. (Beloniformes: Zenarchopteridae) through DNA barcoding
title_full_unstemmed Exploring hidden diversity in Southeast Asia’s Dermogenys spp. (Beloniformes: Zenarchopteridae) through DNA barcoding
title_short Exploring hidden diversity in Southeast Asia’s Dermogenys spp. (Beloniformes: Zenarchopteridae) through DNA barcoding
title_sort exploring hidden diversity in southeast asia’s dermogenys spp. (beloniformes: zenarchopteridae) through dna barcoding
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6050249/
https://www.ncbi.nlm.nih.gov/pubmed/30018357
http://dx.doi.org/10.1038/s41598-018-29049-7
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