Cargando…

Systematic analyses of a novel lncRNA‐associated signature as the prognostic biomarker for Hepatocellular Carcinoma

Accumulating evidence implies that long noncoding RNAs (lncRNAs) play a crucial role in predicting survival for Hepatocellular carcinoma (HCC) patients. This study aims to capture the current research hotspots of HCC, based on the analysis of publications related to HCC research from 2013 to 2017, a...

Descripción completa

Detalles Bibliográficos
Autores principales: Sui, Jing, Miao, Yan, Han, Jiali, Nan, Hongmei, Shen, Bo, Zhang, Xiaomei, Zhang, Yan, Wu, Yuan, Wu, Wenjuan, Liu, Tong, Xu, Siyi, Yang, Sheng, Yin, Lihong, Pu, Yuepu, Liang, Geyu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6051236/
https://www.ncbi.nlm.nih.gov/pubmed/29761859
http://dx.doi.org/10.1002/cam4.1541
_version_ 1783340487818608640
author Sui, Jing
Miao, Yan
Han, Jiali
Nan, Hongmei
Shen, Bo
Zhang, Xiaomei
Zhang, Yan
Wu, Yuan
Wu, Wenjuan
Liu, Tong
Xu, Siyi
Yang, Sheng
Yin, Lihong
Pu, Yuepu
Liang, Geyu
author_facet Sui, Jing
Miao, Yan
Han, Jiali
Nan, Hongmei
Shen, Bo
Zhang, Xiaomei
Zhang, Yan
Wu, Yuan
Wu, Wenjuan
Liu, Tong
Xu, Siyi
Yang, Sheng
Yin, Lihong
Pu, Yuepu
Liang, Geyu
author_sort Sui, Jing
collection PubMed
description Accumulating evidence implies that long noncoding RNAs (lncRNAs) play a crucial role in predicting survival for Hepatocellular carcinoma (HCC) patients. This study aims to capture the current research hotspots of HCC, based on the analysis of publications related to HCC research from 2013 to 2017, and to identify a novel lncRNA signature for HCC prognosis through the data mining in The Cancer Genome Atlas (TCGA). “Prognosis” and “biomarker” were located in the core of the HCC research hotspot. Moreover, long noncoding RNA was the top one research frontier in HCC research. The associations between survival outcome and the expression of lncRNAs were evaluated by the univariate and multivariate Cox proportional hazards regression analyses. Four lncRNAs (LINC00261, TRELM3P, GBP1P1, and CDKN2B‐AS1) were identified as significantly correlated with overall survival (OS). These four lncRNAs were gathered as a single prognostic signature. There was a significant positive correlation between HCC patients with low‐risk scores and overall survival (HR = 1.802, 95%CI [1.224‐2.652], P = .003). Further analysis suggested that the prognostic value of this four‐lncRNA signature was independent in clinical features. The enrichment analysis of prognostic lncRNA‐related gene was performed to find out the related pathways. Our study indicates that this novel lncRNA expression signature may be a useful biomarker of the prognosis for HCC patients, based on bioinformatics analysis.
format Online
Article
Text
id pubmed-6051236
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-60512362018-07-20 Systematic analyses of a novel lncRNA‐associated signature as the prognostic biomarker for Hepatocellular Carcinoma Sui, Jing Miao, Yan Han, Jiali Nan, Hongmei Shen, Bo Zhang, Xiaomei Zhang, Yan Wu, Yuan Wu, Wenjuan Liu, Tong Xu, Siyi Yang, Sheng Yin, Lihong Pu, Yuepu Liang, Geyu Cancer Med Cancer Biology Accumulating evidence implies that long noncoding RNAs (lncRNAs) play a crucial role in predicting survival for Hepatocellular carcinoma (HCC) patients. This study aims to capture the current research hotspots of HCC, based on the analysis of publications related to HCC research from 2013 to 2017, and to identify a novel lncRNA signature for HCC prognosis through the data mining in The Cancer Genome Atlas (TCGA). “Prognosis” and “biomarker” were located in the core of the HCC research hotspot. Moreover, long noncoding RNA was the top one research frontier in HCC research. The associations between survival outcome and the expression of lncRNAs were evaluated by the univariate and multivariate Cox proportional hazards regression analyses. Four lncRNAs (LINC00261, TRELM3P, GBP1P1, and CDKN2B‐AS1) were identified as significantly correlated with overall survival (OS). These four lncRNAs were gathered as a single prognostic signature. There was a significant positive correlation between HCC patients with low‐risk scores and overall survival (HR = 1.802, 95%CI [1.224‐2.652], P = .003). Further analysis suggested that the prognostic value of this four‐lncRNA signature was independent in clinical features. The enrichment analysis of prognostic lncRNA‐related gene was performed to find out the related pathways. Our study indicates that this novel lncRNA expression signature may be a useful biomarker of the prognosis for HCC patients, based on bioinformatics analysis. John Wiley and Sons Inc. 2018-05-15 /pmc/articles/PMC6051236/ /pubmed/29761859 http://dx.doi.org/10.1002/cam4.1541 Text en © 2018 The Authors. Cancer Medicine published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Cancer Biology
Sui, Jing
Miao, Yan
Han, Jiali
Nan, Hongmei
Shen, Bo
Zhang, Xiaomei
Zhang, Yan
Wu, Yuan
Wu, Wenjuan
Liu, Tong
Xu, Siyi
Yang, Sheng
Yin, Lihong
Pu, Yuepu
Liang, Geyu
Systematic analyses of a novel lncRNA‐associated signature as the prognostic biomarker for Hepatocellular Carcinoma
title Systematic analyses of a novel lncRNA‐associated signature as the prognostic biomarker for Hepatocellular Carcinoma
title_full Systematic analyses of a novel lncRNA‐associated signature as the prognostic biomarker for Hepatocellular Carcinoma
title_fullStr Systematic analyses of a novel lncRNA‐associated signature as the prognostic biomarker for Hepatocellular Carcinoma
title_full_unstemmed Systematic analyses of a novel lncRNA‐associated signature as the prognostic biomarker for Hepatocellular Carcinoma
title_short Systematic analyses of a novel lncRNA‐associated signature as the prognostic biomarker for Hepatocellular Carcinoma
title_sort systematic analyses of a novel lncrna‐associated signature as the prognostic biomarker for hepatocellular carcinoma
topic Cancer Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6051236/
https://www.ncbi.nlm.nih.gov/pubmed/29761859
http://dx.doi.org/10.1002/cam4.1541
work_keys_str_mv AT suijing systematicanalysesofanovellncrnaassociatedsignatureastheprognosticbiomarkerforhepatocellularcarcinoma
AT miaoyan systematicanalysesofanovellncrnaassociatedsignatureastheprognosticbiomarkerforhepatocellularcarcinoma
AT hanjiali systematicanalysesofanovellncrnaassociatedsignatureastheprognosticbiomarkerforhepatocellularcarcinoma
AT nanhongmei systematicanalysesofanovellncrnaassociatedsignatureastheprognosticbiomarkerforhepatocellularcarcinoma
AT shenbo systematicanalysesofanovellncrnaassociatedsignatureastheprognosticbiomarkerforhepatocellularcarcinoma
AT zhangxiaomei systematicanalysesofanovellncrnaassociatedsignatureastheprognosticbiomarkerforhepatocellularcarcinoma
AT zhangyan systematicanalysesofanovellncrnaassociatedsignatureastheprognosticbiomarkerforhepatocellularcarcinoma
AT wuyuan systematicanalysesofanovellncrnaassociatedsignatureastheprognosticbiomarkerforhepatocellularcarcinoma
AT wuwenjuan systematicanalysesofanovellncrnaassociatedsignatureastheprognosticbiomarkerforhepatocellularcarcinoma
AT liutong systematicanalysesofanovellncrnaassociatedsignatureastheprognosticbiomarkerforhepatocellularcarcinoma
AT xusiyi systematicanalysesofanovellncrnaassociatedsignatureastheprognosticbiomarkerforhepatocellularcarcinoma
AT yangsheng systematicanalysesofanovellncrnaassociatedsignatureastheprognosticbiomarkerforhepatocellularcarcinoma
AT yinlihong systematicanalysesofanovellncrnaassociatedsignatureastheprognosticbiomarkerforhepatocellularcarcinoma
AT puyuepu systematicanalysesofanovellncrnaassociatedsignatureastheprognosticbiomarkerforhepatocellularcarcinoma
AT lianggeyu systematicanalysesofanovellncrnaassociatedsignatureastheprognosticbiomarkerforhepatocellularcarcinoma