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DNA barcoding Brooklyn (New York): A first assessment of biodiversity in Marine Park by citizen scientists

DNA barcoding is both an important research and science education tool. The technique allows for quick and accurate species identification using only minimal amounts of tissue samples taken from any organism at any developmental phase. DNA barcoding has many practical applications including furtheri...

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Autores principales: Marizzi, Christine, Florio, Antonia, Lee, Melissa, Khalfan, Mohammed, Ghiban, Cornel, Nash, Bruce, Dorey, Jenna, McKenzie, Sean, Mazza, Christine, Cellini, Fabiana, Baria, Carlo, Bepat, Ron, Cosentino, Lena, Dvorak, Alexander, Gacevic, Amina, Guzman-Moumtzis, Cristina, Heller, Francesca, Holt, Nicholas Alexander, Horenstein, Jeffrey, Joralemon, Vincent, Kaur, Manveer, Kaur, Tanveer, Khan, Armani, Kuppan, Jessica, Laverty, Scott, Lock, Camila, Pena, Marianne, Petrychyn, Ilona, Puthenkalam, Indu, Ram, Daval, Ramos, Arlene, Scoca, Noelle, Sin, Rachel, Gonzalez, Izabel, Thakur, Akansha, Usmanov, Husan, Han, Karen, Wu, Andy, Zhu, Tiger, Micklos, David Andrew
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6051577/
https://www.ncbi.nlm.nih.gov/pubmed/30020927
http://dx.doi.org/10.1371/journal.pone.0199015
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author Marizzi, Christine
Florio, Antonia
Lee, Melissa
Khalfan, Mohammed
Ghiban, Cornel
Nash, Bruce
Dorey, Jenna
McKenzie, Sean
Mazza, Christine
Cellini, Fabiana
Baria, Carlo
Bepat, Ron
Cosentino, Lena
Dvorak, Alexander
Gacevic, Amina
Guzman-Moumtzis, Cristina
Heller, Francesca
Holt, Nicholas Alexander
Horenstein, Jeffrey
Joralemon, Vincent
Kaur, Manveer
Kaur, Tanveer
Khan, Armani
Kuppan, Jessica
Laverty, Scott
Lock, Camila
Pena, Marianne
Petrychyn, Ilona
Puthenkalam, Indu
Ram, Daval
Ramos, Arlene
Scoca, Noelle
Sin, Rachel
Gonzalez, Izabel
Thakur, Akansha
Usmanov, Husan
Han, Karen
Wu, Andy
Zhu, Tiger
Micklos, David Andrew
author_facet Marizzi, Christine
Florio, Antonia
Lee, Melissa
Khalfan, Mohammed
Ghiban, Cornel
Nash, Bruce
Dorey, Jenna
McKenzie, Sean
Mazza, Christine
Cellini, Fabiana
Baria, Carlo
Bepat, Ron
Cosentino, Lena
Dvorak, Alexander
Gacevic, Amina
Guzman-Moumtzis, Cristina
Heller, Francesca
Holt, Nicholas Alexander
Horenstein, Jeffrey
Joralemon, Vincent
Kaur, Manveer
Kaur, Tanveer
Khan, Armani
Kuppan, Jessica
Laverty, Scott
Lock, Camila
Pena, Marianne
Petrychyn, Ilona
Puthenkalam, Indu
Ram, Daval
Ramos, Arlene
Scoca, Noelle
Sin, Rachel
Gonzalez, Izabel
Thakur, Akansha
Usmanov, Husan
Han, Karen
Wu, Andy
Zhu, Tiger
Micklos, David Andrew
author_sort Marizzi, Christine
collection PubMed
description DNA barcoding is both an important research and science education tool. The technique allows for quick and accurate species identification using only minimal amounts of tissue samples taken from any organism at any developmental phase. DNA barcoding has many practical applications including furthering the study of taxonomy and monitoring biodiversity. In addition to these uses, DNA barcoding is a powerful tool to empower, engage, and educate students in the scientific method while conducting productive and creative research. The study presented here provides the first assessment of Marine Park (Brooklyn, New York, USA) biodiversity using DNA barcoding. New York City citizen scientists (high school students and their teachers) were trained to identify species using DNA barcoding during a two–week long institute. By performing NCBI GenBank BLAST searches, students taxonomically identified 187 samples (1 fungus, 70 animals and 116 plants) and also published 12 novel DNA barcodes on GenBank. Students also identified 7 ant species and demonstrated the potential of DNA barcoding for identification of this especially diverse group when coupled with traditional taxonomy using morphology. Here we outline how DNA barcoding allows citizen scientists to make preliminary taxonomic identifications and contribute to modern biodiversity research.
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spelling pubmed-60515772018-07-27 DNA barcoding Brooklyn (New York): A first assessment of biodiversity in Marine Park by citizen scientists Marizzi, Christine Florio, Antonia Lee, Melissa Khalfan, Mohammed Ghiban, Cornel Nash, Bruce Dorey, Jenna McKenzie, Sean Mazza, Christine Cellini, Fabiana Baria, Carlo Bepat, Ron Cosentino, Lena Dvorak, Alexander Gacevic, Amina Guzman-Moumtzis, Cristina Heller, Francesca Holt, Nicholas Alexander Horenstein, Jeffrey Joralemon, Vincent Kaur, Manveer Kaur, Tanveer Khan, Armani Kuppan, Jessica Laverty, Scott Lock, Camila Pena, Marianne Petrychyn, Ilona Puthenkalam, Indu Ram, Daval Ramos, Arlene Scoca, Noelle Sin, Rachel Gonzalez, Izabel Thakur, Akansha Usmanov, Husan Han, Karen Wu, Andy Zhu, Tiger Micklos, David Andrew PLoS One Research Article DNA barcoding is both an important research and science education tool. The technique allows for quick and accurate species identification using only minimal amounts of tissue samples taken from any organism at any developmental phase. DNA barcoding has many practical applications including furthering the study of taxonomy and monitoring biodiversity. In addition to these uses, DNA barcoding is a powerful tool to empower, engage, and educate students in the scientific method while conducting productive and creative research. The study presented here provides the first assessment of Marine Park (Brooklyn, New York, USA) biodiversity using DNA barcoding. New York City citizen scientists (high school students and their teachers) were trained to identify species using DNA barcoding during a two–week long institute. By performing NCBI GenBank BLAST searches, students taxonomically identified 187 samples (1 fungus, 70 animals and 116 plants) and also published 12 novel DNA barcodes on GenBank. Students also identified 7 ant species and demonstrated the potential of DNA barcoding for identification of this especially diverse group when coupled with traditional taxonomy using morphology. Here we outline how DNA barcoding allows citizen scientists to make preliminary taxonomic identifications and contribute to modern biodiversity research. Public Library of Science 2018-07-18 /pmc/articles/PMC6051577/ /pubmed/30020927 http://dx.doi.org/10.1371/journal.pone.0199015 Text en © 2018 Marizzi et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Marizzi, Christine
Florio, Antonia
Lee, Melissa
Khalfan, Mohammed
Ghiban, Cornel
Nash, Bruce
Dorey, Jenna
McKenzie, Sean
Mazza, Christine
Cellini, Fabiana
Baria, Carlo
Bepat, Ron
Cosentino, Lena
Dvorak, Alexander
Gacevic, Amina
Guzman-Moumtzis, Cristina
Heller, Francesca
Holt, Nicholas Alexander
Horenstein, Jeffrey
Joralemon, Vincent
Kaur, Manveer
Kaur, Tanveer
Khan, Armani
Kuppan, Jessica
Laverty, Scott
Lock, Camila
Pena, Marianne
Petrychyn, Ilona
Puthenkalam, Indu
Ram, Daval
Ramos, Arlene
Scoca, Noelle
Sin, Rachel
Gonzalez, Izabel
Thakur, Akansha
Usmanov, Husan
Han, Karen
Wu, Andy
Zhu, Tiger
Micklos, David Andrew
DNA barcoding Brooklyn (New York): A first assessment of biodiversity in Marine Park by citizen scientists
title DNA barcoding Brooklyn (New York): A first assessment of biodiversity in Marine Park by citizen scientists
title_full DNA barcoding Brooklyn (New York): A first assessment of biodiversity in Marine Park by citizen scientists
title_fullStr DNA barcoding Brooklyn (New York): A first assessment of biodiversity in Marine Park by citizen scientists
title_full_unstemmed DNA barcoding Brooklyn (New York): A first assessment of biodiversity in Marine Park by citizen scientists
title_short DNA barcoding Brooklyn (New York): A first assessment of biodiversity in Marine Park by citizen scientists
title_sort dna barcoding brooklyn (new york): a first assessment of biodiversity in marine park by citizen scientists
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6051577/
https://www.ncbi.nlm.nih.gov/pubmed/30020927
http://dx.doi.org/10.1371/journal.pone.0199015
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