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DNA barcoding Brooklyn (New York): A first assessment of biodiversity in Marine Park by citizen scientists
DNA barcoding is both an important research and science education tool. The technique allows for quick and accurate species identification using only minimal amounts of tissue samples taken from any organism at any developmental phase. DNA barcoding has many practical applications including furtheri...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6051577/ https://www.ncbi.nlm.nih.gov/pubmed/30020927 http://dx.doi.org/10.1371/journal.pone.0199015 |
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author | Marizzi, Christine Florio, Antonia Lee, Melissa Khalfan, Mohammed Ghiban, Cornel Nash, Bruce Dorey, Jenna McKenzie, Sean Mazza, Christine Cellini, Fabiana Baria, Carlo Bepat, Ron Cosentino, Lena Dvorak, Alexander Gacevic, Amina Guzman-Moumtzis, Cristina Heller, Francesca Holt, Nicholas Alexander Horenstein, Jeffrey Joralemon, Vincent Kaur, Manveer Kaur, Tanveer Khan, Armani Kuppan, Jessica Laverty, Scott Lock, Camila Pena, Marianne Petrychyn, Ilona Puthenkalam, Indu Ram, Daval Ramos, Arlene Scoca, Noelle Sin, Rachel Gonzalez, Izabel Thakur, Akansha Usmanov, Husan Han, Karen Wu, Andy Zhu, Tiger Micklos, David Andrew |
author_facet | Marizzi, Christine Florio, Antonia Lee, Melissa Khalfan, Mohammed Ghiban, Cornel Nash, Bruce Dorey, Jenna McKenzie, Sean Mazza, Christine Cellini, Fabiana Baria, Carlo Bepat, Ron Cosentino, Lena Dvorak, Alexander Gacevic, Amina Guzman-Moumtzis, Cristina Heller, Francesca Holt, Nicholas Alexander Horenstein, Jeffrey Joralemon, Vincent Kaur, Manveer Kaur, Tanveer Khan, Armani Kuppan, Jessica Laverty, Scott Lock, Camila Pena, Marianne Petrychyn, Ilona Puthenkalam, Indu Ram, Daval Ramos, Arlene Scoca, Noelle Sin, Rachel Gonzalez, Izabel Thakur, Akansha Usmanov, Husan Han, Karen Wu, Andy Zhu, Tiger Micklos, David Andrew |
author_sort | Marizzi, Christine |
collection | PubMed |
description | DNA barcoding is both an important research and science education tool. The technique allows for quick and accurate species identification using only minimal amounts of tissue samples taken from any organism at any developmental phase. DNA barcoding has many practical applications including furthering the study of taxonomy and monitoring biodiversity. In addition to these uses, DNA barcoding is a powerful tool to empower, engage, and educate students in the scientific method while conducting productive and creative research. The study presented here provides the first assessment of Marine Park (Brooklyn, New York, USA) biodiversity using DNA barcoding. New York City citizen scientists (high school students and their teachers) were trained to identify species using DNA barcoding during a two–week long institute. By performing NCBI GenBank BLAST searches, students taxonomically identified 187 samples (1 fungus, 70 animals and 116 plants) and also published 12 novel DNA barcodes on GenBank. Students also identified 7 ant species and demonstrated the potential of DNA barcoding for identification of this especially diverse group when coupled with traditional taxonomy using morphology. Here we outline how DNA barcoding allows citizen scientists to make preliminary taxonomic identifications and contribute to modern biodiversity research. |
format | Online Article Text |
id | pubmed-6051577 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-60515772018-07-27 DNA barcoding Brooklyn (New York): A first assessment of biodiversity in Marine Park by citizen scientists Marizzi, Christine Florio, Antonia Lee, Melissa Khalfan, Mohammed Ghiban, Cornel Nash, Bruce Dorey, Jenna McKenzie, Sean Mazza, Christine Cellini, Fabiana Baria, Carlo Bepat, Ron Cosentino, Lena Dvorak, Alexander Gacevic, Amina Guzman-Moumtzis, Cristina Heller, Francesca Holt, Nicholas Alexander Horenstein, Jeffrey Joralemon, Vincent Kaur, Manveer Kaur, Tanveer Khan, Armani Kuppan, Jessica Laverty, Scott Lock, Camila Pena, Marianne Petrychyn, Ilona Puthenkalam, Indu Ram, Daval Ramos, Arlene Scoca, Noelle Sin, Rachel Gonzalez, Izabel Thakur, Akansha Usmanov, Husan Han, Karen Wu, Andy Zhu, Tiger Micklos, David Andrew PLoS One Research Article DNA barcoding is both an important research and science education tool. The technique allows for quick and accurate species identification using only minimal amounts of tissue samples taken from any organism at any developmental phase. DNA barcoding has many practical applications including furthering the study of taxonomy and monitoring biodiversity. In addition to these uses, DNA barcoding is a powerful tool to empower, engage, and educate students in the scientific method while conducting productive and creative research. The study presented here provides the first assessment of Marine Park (Brooklyn, New York, USA) biodiversity using DNA barcoding. New York City citizen scientists (high school students and their teachers) were trained to identify species using DNA barcoding during a two–week long institute. By performing NCBI GenBank BLAST searches, students taxonomically identified 187 samples (1 fungus, 70 animals and 116 plants) and also published 12 novel DNA barcodes on GenBank. Students also identified 7 ant species and demonstrated the potential of DNA barcoding for identification of this especially diverse group when coupled with traditional taxonomy using morphology. Here we outline how DNA barcoding allows citizen scientists to make preliminary taxonomic identifications and contribute to modern biodiversity research. Public Library of Science 2018-07-18 /pmc/articles/PMC6051577/ /pubmed/30020927 http://dx.doi.org/10.1371/journal.pone.0199015 Text en © 2018 Marizzi et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Marizzi, Christine Florio, Antonia Lee, Melissa Khalfan, Mohammed Ghiban, Cornel Nash, Bruce Dorey, Jenna McKenzie, Sean Mazza, Christine Cellini, Fabiana Baria, Carlo Bepat, Ron Cosentino, Lena Dvorak, Alexander Gacevic, Amina Guzman-Moumtzis, Cristina Heller, Francesca Holt, Nicholas Alexander Horenstein, Jeffrey Joralemon, Vincent Kaur, Manveer Kaur, Tanveer Khan, Armani Kuppan, Jessica Laverty, Scott Lock, Camila Pena, Marianne Petrychyn, Ilona Puthenkalam, Indu Ram, Daval Ramos, Arlene Scoca, Noelle Sin, Rachel Gonzalez, Izabel Thakur, Akansha Usmanov, Husan Han, Karen Wu, Andy Zhu, Tiger Micklos, David Andrew DNA barcoding Brooklyn (New York): A first assessment of biodiversity in Marine Park by citizen scientists |
title | DNA barcoding Brooklyn (New York): A first assessment of biodiversity in Marine Park by citizen scientists |
title_full | DNA barcoding Brooklyn (New York): A first assessment of biodiversity in Marine Park by citizen scientists |
title_fullStr | DNA barcoding Brooklyn (New York): A first assessment of biodiversity in Marine Park by citizen scientists |
title_full_unstemmed | DNA barcoding Brooklyn (New York): A first assessment of biodiversity in Marine Park by citizen scientists |
title_short | DNA barcoding Brooklyn (New York): A first assessment of biodiversity in Marine Park by citizen scientists |
title_sort | dna barcoding brooklyn (new york): a first assessment of biodiversity in marine park by citizen scientists |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6051577/ https://www.ncbi.nlm.nih.gov/pubmed/30020927 http://dx.doi.org/10.1371/journal.pone.0199015 |
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