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Compressing Networks with Super Nodes
Community detection is a commonly used technique for identifying groups in a network based on similarities in connectivity patterns. To facilitate community detection in large networks, we recast the network as a smaller network of ‘super nodes’, where each super node comprises one or more nodes of...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6052167/ https://www.ncbi.nlm.nih.gov/pubmed/30022035 http://dx.doi.org/10.1038/s41598-018-29174-3 |
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author | Stanley, Natalie Kwitt, Roland Niethammer, Marc Mucha, Peter J. |
author_facet | Stanley, Natalie Kwitt, Roland Niethammer, Marc Mucha, Peter J. |
author_sort | Stanley, Natalie |
collection | PubMed |
description | Community detection is a commonly used technique for identifying groups in a network based on similarities in connectivity patterns. To facilitate community detection in large networks, we recast the network as a smaller network of ‘super nodes’, where each super node comprises one or more nodes of the original network. We can then use this super node representation as the input into standard community detection algorithms. To define the seeds, or centers, of our super nodes, we apply the ‘CoreHD’ ranking, a technique applied in network dismantling and decycling problems. We test our approach through the analysis of two common methods for community detection: modularity maximization with the Louvain algorithm and maximum likelihood optimization for fitting a stochastic block model. Our results highlight that applying community detection to the compressed network of super nodes is significantly faster while successfully producing partitions that are more aligned with the local network connectivity and more stable across multiple (stochastic) runs within and between community detection algorithms, yet still overlap well with the results obtained using the full network. |
format | Online Article Text |
id | pubmed-6052167 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-60521672018-07-23 Compressing Networks with Super Nodes Stanley, Natalie Kwitt, Roland Niethammer, Marc Mucha, Peter J. Sci Rep Article Community detection is a commonly used technique for identifying groups in a network based on similarities in connectivity patterns. To facilitate community detection in large networks, we recast the network as a smaller network of ‘super nodes’, where each super node comprises one or more nodes of the original network. We can then use this super node representation as the input into standard community detection algorithms. To define the seeds, or centers, of our super nodes, we apply the ‘CoreHD’ ranking, a technique applied in network dismantling and decycling problems. We test our approach through the analysis of two common methods for community detection: modularity maximization with the Louvain algorithm and maximum likelihood optimization for fitting a stochastic block model. Our results highlight that applying community detection to the compressed network of super nodes is significantly faster while successfully producing partitions that are more aligned with the local network connectivity and more stable across multiple (stochastic) runs within and between community detection algorithms, yet still overlap well with the results obtained using the full network. Nature Publishing Group UK 2018-07-18 /pmc/articles/PMC6052167/ /pubmed/30022035 http://dx.doi.org/10.1038/s41598-018-29174-3 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Stanley, Natalie Kwitt, Roland Niethammer, Marc Mucha, Peter J. Compressing Networks with Super Nodes |
title | Compressing Networks with Super Nodes |
title_full | Compressing Networks with Super Nodes |
title_fullStr | Compressing Networks with Super Nodes |
title_full_unstemmed | Compressing Networks with Super Nodes |
title_short | Compressing Networks with Super Nodes |
title_sort | compressing networks with super nodes |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6052167/ https://www.ncbi.nlm.nih.gov/pubmed/30022035 http://dx.doi.org/10.1038/s41598-018-29174-3 |
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