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Natronobiforma cellulositropha gen. nov., sp. nov., a novel haloalkaliphilic member of the family Natrialbaceae (class Halobacteria) from hypersaline alkaline lakes

Six strains of extremely halophilic and alkaliphilic euryarchaea were enriched and isolated in pure culture from surface brines and sediments of hypersaline alkaline lakes in various geographical locations with various forms of insoluble cellulose as growth substrate. The cells are mostly flat motil...

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Autores principales: Sorokin, Dimitry Y., Khijniak, Tatiana V., Kostrikina, Nadezhda A., Elcheninov, Alexander G., Toshchakov, Stepan V., Bale, Nicole J., Damsté, Jaap S. Sinninghe, Kublanov, Ilya V.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: G. Fischer Verlag 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6052348/
https://www.ncbi.nlm.nih.gov/pubmed/29752017
http://dx.doi.org/10.1016/j.syapm.2018.04.002
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author Sorokin, Dimitry Y.
Khijniak, Tatiana V.
Kostrikina, Nadezhda A.
Elcheninov, Alexander G.
Toshchakov, Stepan V.
Bale, Nicole J.
Damsté, Jaap S. Sinninghe
Kublanov, Ilya V.
author_facet Sorokin, Dimitry Y.
Khijniak, Tatiana V.
Kostrikina, Nadezhda A.
Elcheninov, Alexander G.
Toshchakov, Stepan V.
Bale, Nicole J.
Damsté, Jaap S. Sinninghe
Kublanov, Ilya V.
author_sort Sorokin, Dimitry Y.
collection PubMed
description Six strains of extremely halophilic and alkaliphilic euryarchaea were enriched and isolated in pure culture from surface brines and sediments of hypersaline alkaline lakes in various geographical locations with various forms of insoluble cellulose as growth substrate. The cells are mostly flat motile rods with a thin monolayer cell wall while growing on cellobiose. In contrast, the cells growing with cellulose are mostly nonmotile cocci covered with a thick external EPS layer. The isolates, designated AArcel, are obligate aerobic heterotrophs with a narrow substrate spectrum. All strains can use insoluble celluloses, cellobiose, a few soluble glucans and xylan as their carbon and energy source. They are extreme halophiles, growing within the range from 2.5 to 4.8 M total Na(+) (optimum at 4 M) and obligate alkaliphiles, with the pH range for growth from 7.5 to 9.9 (optimum at 8.5–9). The core archaeal lipids of strain AArcel5(T) were dominated by C(20)–C(20) dialkyl glycerol ether (DGE) (i.e. archaeol) and C(20)–C(25) DGE in nearly equal proportion. The 16S rRNA gene analysis indicated that all six isolates belong to a single genomic species mostly related to the genera Saliphagus-Natribaculum-Halovarius. Taking together a substantial phenotypic difference of the new isolates from the closest relatives and the phylogenetic distance, it is concluded that the AArcel group represents a novel genus-level branch within the family Natrialbaceae for which the name Natronobiforma cellulositropha gen. nov., sp. nov. is proposed with AArcel5(T) as the type strain (JCM 31939(T) = UNIQEM U972(T)).
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spelling pubmed-60523482018-07-20 Natronobiforma cellulositropha gen. nov., sp. nov., a novel haloalkaliphilic member of the family Natrialbaceae (class Halobacteria) from hypersaline alkaline lakes Sorokin, Dimitry Y. Khijniak, Tatiana V. Kostrikina, Nadezhda A. Elcheninov, Alexander G. Toshchakov, Stepan V. Bale, Nicole J. Damsté, Jaap S. Sinninghe Kublanov, Ilya V. Syst Appl Microbiol Article Six strains of extremely halophilic and alkaliphilic euryarchaea were enriched and isolated in pure culture from surface brines and sediments of hypersaline alkaline lakes in various geographical locations with various forms of insoluble cellulose as growth substrate. The cells are mostly flat motile rods with a thin monolayer cell wall while growing on cellobiose. In contrast, the cells growing with cellulose are mostly nonmotile cocci covered with a thick external EPS layer. The isolates, designated AArcel, are obligate aerobic heterotrophs with a narrow substrate spectrum. All strains can use insoluble celluloses, cellobiose, a few soluble glucans and xylan as their carbon and energy source. They are extreme halophiles, growing within the range from 2.5 to 4.8 M total Na(+) (optimum at 4 M) and obligate alkaliphiles, with the pH range for growth from 7.5 to 9.9 (optimum at 8.5–9). The core archaeal lipids of strain AArcel5(T) were dominated by C(20)–C(20) dialkyl glycerol ether (DGE) (i.e. archaeol) and C(20)–C(25) DGE in nearly equal proportion. The 16S rRNA gene analysis indicated that all six isolates belong to a single genomic species mostly related to the genera Saliphagus-Natribaculum-Halovarius. Taking together a substantial phenotypic difference of the new isolates from the closest relatives and the phylogenetic distance, it is concluded that the AArcel group represents a novel genus-level branch within the family Natrialbaceae for which the name Natronobiforma cellulositropha gen. nov., sp. nov. is proposed with AArcel5(T) as the type strain (JCM 31939(T) = UNIQEM U972(T)). G. Fischer Verlag 2018-07 /pmc/articles/PMC6052348/ /pubmed/29752017 http://dx.doi.org/10.1016/j.syapm.2018.04.002 Text en © 2018 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Article
Sorokin, Dimitry Y.
Khijniak, Tatiana V.
Kostrikina, Nadezhda A.
Elcheninov, Alexander G.
Toshchakov, Stepan V.
Bale, Nicole J.
Damsté, Jaap S. Sinninghe
Kublanov, Ilya V.
Natronobiforma cellulositropha gen. nov., sp. nov., a novel haloalkaliphilic member of the family Natrialbaceae (class Halobacteria) from hypersaline alkaline lakes
title Natronobiforma cellulositropha gen. nov., sp. nov., a novel haloalkaliphilic member of the family Natrialbaceae (class Halobacteria) from hypersaline alkaline lakes
title_full Natronobiforma cellulositropha gen. nov., sp. nov., a novel haloalkaliphilic member of the family Natrialbaceae (class Halobacteria) from hypersaline alkaline lakes
title_fullStr Natronobiforma cellulositropha gen. nov., sp. nov., a novel haloalkaliphilic member of the family Natrialbaceae (class Halobacteria) from hypersaline alkaline lakes
title_full_unstemmed Natronobiforma cellulositropha gen. nov., sp. nov., a novel haloalkaliphilic member of the family Natrialbaceae (class Halobacteria) from hypersaline alkaline lakes
title_short Natronobiforma cellulositropha gen. nov., sp. nov., a novel haloalkaliphilic member of the family Natrialbaceae (class Halobacteria) from hypersaline alkaline lakes
title_sort natronobiforma cellulositropha gen. nov., sp. nov., a novel haloalkaliphilic member of the family natrialbaceae (class halobacteria) from hypersaline alkaline lakes
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6052348/
https://www.ncbi.nlm.nih.gov/pubmed/29752017
http://dx.doi.org/10.1016/j.syapm.2018.04.002
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