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ENT COBRA ONTOLOGY: the covariates classification system proposed by the Head & Neck and Skin GEC-ESTRO Working Group for interdisciplinary standardized data collection in head and neck patient cohorts treated with interventional radiotherapy (brachytherapy)
PURPOSE: Clinical data collecting is expensive in terms of time and human resources. Data can be collected in different ways; therefore, performing multicentric research based on previously stored data is often difficult. The primary objective of the ENT COBRA (COnsortium for BRachytherapy data Anal...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Termedia Publishing House
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6052377/ https://www.ncbi.nlm.nih.gov/pubmed/30038647 http://dx.doi.org/10.5114/jcb.2018.76982 |
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author | Tagliaferri, Luca Budrukkar, Ashwini Lenkowicz, Jacopo Cambeiro, Mauricio Bussu, Francesco Guinot, Jose Luis Hildebrandt, Guido Johansson, Bengt Meyer, Jens E. Niehoff, Peter Rovirosa, Angeles Takácsi-Nagy, Zoltán Boldrini, Luca Dinapoli, Nicola Lanzotti, Vito Damiani, Andrea Gatta, Roberto Fionda, Bruno Lancellotta, Valentina Soror, Tamer Monge, Rafael Martìnez Valentini, Vincenzo Kovács, György |
author_facet | Tagliaferri, Luca Budrukkar, Ashwini Lenkowicz, Jacopo Cambeiro, Mauricio Bussu, Francesco Guinot, Jose Luis Hildebrandt, Guido Johansson, Bengt Meyer, Jens E. Niehoff, Peter Rovirosa, Angeles Takácsi-Nagy, Zoltán Boldrini, Luca Dinapoli, Nicola Lanzotti, Vito Damiani, Andrea Gatta, Roberto Fionda, Bruno Lancellotta, Valentina Soror, Tamer Monge, Rafael Martìnez Valentini, Vincenzo Kovács, György |
author_sort | Tagliaferri, Luca |
collection | PubMed |
description | PURPOSE: Clinical data collecting is expensive in terms of time and human resources. Data can be collected in different ways; therefore, performing multicentric research based on previously stored data is often difficult. The primary objective of the ENT COBRA (COnsortium for BRachytherapy data Analysis) ontology is to define a specific terminological system to standardized data collection for head and neck (H&N) cancer patients treated with interventional radiotherapy. MATERIAL AND METHODS: ENT-COBRA is a consortium for standardized data collection for H&N patients treated with interventional radiotherapy. It is linked to H&N and Skin GEC-ESTRO Working Group and includes 11 centers from 6 countries. Its ontology was firstly defined by a multicentric working group, then evaluated by the consortium followed by a multi-professional technical commission involving a mathematician, an engineer, a physician with experience in data storage, a programmer, and a software expert. RESULTS: Two hundred and forty variables were defined on 13 input forms. There are 3 levels, each offering a specific type of analysis: 1. Registry level (epidemiology analysis); 2. Procedures level (standard oncology analysis); 3. Research level (radiomics analysis). The ontology was approved by the consortium and technical commission; an ad-hoc software architecture (“broker”) remaps the data present in already existing storage systems of the various centers according to the shared terminology system. The first data sharing was successfully performed using COBRA software and the ENT COBRA Ontology, automatically collecting data directly from 3 different hospital databases (Lübeck, Navarra, and Rome) in November 2017. CONCLUSIONS: The COBRA Ontology is a good response to the multi-dimensional criticalities of data collection, retrieval, and usability. It allows to create a software for large multicentric databases with implementation of specific remapping functions wherever necessary. This approach is well-received by all involved parties, primarily because it does not change a single center’s storing technologies, procedures, and habits. |
format | Online Article Text |
id | pubmed-6052377 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Termedia Publishing House |
record_format | MEDLINE/PubMed |
spelling | pubmed-60523772018-07-23 ENT COBRA ONTOLOGY: the covariates classification system proposed by the Head & Neck and Skin GEC-ESTRO Working Group for interdisciplinary standardized data collection in head and neck patient cohorts treated with interventional radiotherapy (brachytherapy) Tagliaferri, Luca Budrukkar, Ashwini Lenkowicz, Jacopo Cambeiro, Mauricio Bussu, Francesco Guinot, Jose Luis Hildebrandt, Guido Johansson, Bengt Meyer, Jens E. Niehoff, Peter Rovirosa, Angeles Takácsi-Nagy, Zoltán Boldrini, Luca Dinapoli, Nicola Lanzotti, Vito Damiani, Andrea Gatta, Roberto Fionda, Bruno Lancellotta, Valentina Soror, Tamer Monge, Rafael Martìnez Valentini, Vincenzo Kovács, György J Contemp Brachytherapy Review Paper PURPOSE: Clinical data collecting is expensive in terms of time and human resources. Data can be collected in different ways; therefore, performing multicentric research based on previously stored data is often difficult. The primary objective of the ENT COBRA (COnsortium for BRachytherapy data Analysis) ontology is to define a specific terminological system to standardized data collection for head and neck (H&N) cancer patients treated with interventional radiotherapy. MATERIAL AND METHODS: ENT-COBRA is a consortium for standardized data collection for H&N patients treated with interventional radiotherapy. It is linked to H&N and Skin GEC-ESTRO Working Group and includes 11 centers from 6 countries. Its ontology was firstly defined by a multicentric working group, then evaluated by the consortium followed by a multi-professional technical commission involving a mathematician, an engineer, a physician with experience in data storage, a programmer, and a software expert. RESULTS: Two hundred and forty variables were defined on 13 input forms. There are 3 levels, each offering a specific type of analysis: 1. Registry level (epidemiology analysis); 2. Procedures level (standard oncology analysis); 3. Research level (radiomics analysis). The ontology was approved by the consortium and technical commission; an ad-hoc software architecture (“broker”) remaps the data present in already existing storage systems of the various centers according to the shared terminology system. The first data sharing was successfully performed using COBRA software and the ENT COBRA Ontology, automatically collecting data directly from 3 different hospital databases (Lübeck, Navarra, and Rome) in November 2017. CONCLUSIONS: The COBRA Ontology is a good response to the multi-dimensional criticalities of data collection, retrieval, and usability. It allows to create a software for large multicentric databases with implementation of specific remapping functions wherever necessary. This approach is well-received by all involved parties, primarily because it does not change a single center’s storing technologies, procedures, and habits. Termedia Publishing House 2018-06-30 2018-06 /pmc/articles/PMC6052377/ /pubmed/30038647 http://dx.doi.org/10.5114/jcb.2018.76982 Text en Copyright: © 2018 Termedia Sp. z o. o. http://creativecommons.org/licenses/by-nc-sa/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0) License, allowing third parties to copy and redistribute the material in any medium or format and to remix, transform, and build upon the material, provided the original work is properly cited and states its license. |
spellingShingle | Review Paper Tagliaferri, Luca Budrukkar, Ashwini Lenkowicz, Jacopo Cambeiro, Mauricio Bussu, Francesco Guinot, Jose Luis Hildebrandt, Guido Johansson, Bengt Meyer, Jens E. Niehoff, Peter Rovirosa, Angeles Takácsi-Nagy, Zoltán Boldrini, Luca Dinapoli, Nicola Lanzotti, Vito Damiani, Andrea Gatta, Roberto Fionda, Bruno Lancellotta, Valentina Soror, Tamer Monge, Rafael Martìnez Valentini, Vincenzo Kovács, György ENT COBRA ONTOLOGY: the covariates classification system proposed by the Head & Neck and Skin GEC-ESTRO Working Group for interdisciplinary standardized data collection in head and neck patient cohorts treated with interventional radiotherapy (brachytherapy) |
title | ENT COBRA ONTOLOGY: the covariates classification system proposed by the Head & Neck and Skin GEC-ESTRO Working Group for interdisciplinary standardized data collection in head and neck patient cohorts treated with interventional radiotherapy (brachytherapy) |
title_full | ENT COBRA ONTOLOGY: the covariates classification system proposed by the Head & Neck and Skin GEC-ESTRO Working Group for interdisciplinary standardized data collection in head and neck patient cohorts treated with interventional radiotherapy (brachytherapy) |
title_fullStr | ENT COBRA ONTOLOGY: the covariates classification system proposed by the Head & Neck and Skin GEC-ESTRO Working Group for interdisciplinary standardized data collection in head and neck patient cohorts treated with interventional radiotherapy (brachytherapy) |
title_full_unstemmed | ENT COBRA ONTOLOGY: the covariates classification system proposed by the Head & Neck and Skin GEC-ESTRO Working Group for interdisciplinary standardized data collection in head and neck patient cohorts treated with interventional radiotherapy (brachytherapy) |
title_short | ENT COBRA ONTOLOGY: the covariates classification system proposed by the Head & Neck and Skin GEC-ESTRO Working Group for interdisciplinary standardized data collection in head and neck patient cohorts treated with interventional radiotherapy (brachytherapy) |
title_sort | ent cobra ontology: the covariates classification system proposed by the head & neck and skin gec-estro working group for interdisciplinary standardized data collection in head and neck patient cohorts treated with interventional radiotherapy (brachytherapy) |
topic | Review Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6052377/ https://www.ncbi.nlm.nih.gov/pubmed/30038647 http://dx.doi.org/10.5114/jcb.2018.76982 |
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