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The importance of stool DNA methylation in colorectal cancer diagnosis: A meta-analysis

A large number of tumor-related methylated genes have been suggested to be of diagnostic and prognostic values for CRC when analyzed in patients' stool samples; however, reported sensitivities and specificities have been inconsistent and widely varied. This meta-analysis was conducted to assess...

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Autores principales: Mojtabanezhad Shariatpanahi, Afsaneh, Yassi, Maryam, Nouraie, Mehdi, Sahebkar, Amirhossein, Varshoee Tabrizi, Fatemeh, Kerachian, Mohammad Amin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6053185/
https://www.ncbi.nlm.nih.gov/pubmed/30024936
http://dx.doi.org/10.1371/journal.pone.0200735
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author Mojtabanezhad Shariatpanahi, Afsaneh
Yassi, Maryam
Nouraie, Mehdi
Sahebkar, Amirhossein
Varshoee Tabrizi, Fatemeh
Kerachian, Mohammad Amin
author_facet Mojtabanezhad Shariatpanahi, Afsaneh
Yassi, Maryam
Nouraie, Mehdi
Sahebkar, Amirhossein
Varshoee Tabrizi, Fatemeh
Kerachian, Mohammad Amin
author_sort Mojtabanezhad Shariatpanahi, Afsaneh
collection PubMed
description A large number of tumor-related methylated genes have been suggested to be of diagnostic and prognostic values for CRC when analyzed in patients' stool samples; however, reported sensitivities and specificities have been inconsistent and widely varied. This meta-analysis was conducted to assess the detection accuracy of stool DNA methylation assay in CRC, early stages of CRC (advanced adenoma, non-advanced adenomas) and hyperplastic polyps, separately. We searched MEDLINE, Web of Science, Scopus and Google Scholar databases until May 1, 2016. From 469 publications obtained in the initial literature search, 38 studies were included in the final analysis involving 4867 individuals. The true positive, false positive, true negative and false negative of a stool-based DNA methylation biomarker using all single-gene tests considering a certain gene; regardless of a specific gene were pooled and studied in different categories. The sensitivity of different genes in detecting different stages of CRC ranged from 0% to 100% and the specificities ranged from 73% to 100%. Our results elucidated that SFRP1 and SFRP2 methylation possessed promising accuracy for detection of not only CRC (DOR: 31.67; 95%CI, 12.31–81.49 and DOR: 35.36; 95%CI, 18.71–66.84, respectively) but also the early stages of cancer, adenoma (DOR: 19.72; 95%CI, 6.68–58.25 and DOR: 13.20; 95%CI, 6.01–28.00, respectively). Besides, NDRG4 could be also considered as a significant diagnostic marker gene in CRC (DOR: 24.37; 95%CI, 10.11–58.73) and VIM in adenoma (DOR: 15.21; 95%CI, 2.72–85.10). In conclusion, stool DNA hypermethylation assay based on the candidate genes SFRP1, SFRP2, NDRG4 and VIM could offer potential diagnostic value for CRC based on the findings of this meta-analysis.
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spelling pubmed-60531852018-07-27 The importance of stool DNA methylation in colorectal cancer diagnosis: A meta-analysis Mojtabanezhad Shariatpanahi, Afsaneh Yassi, Maryam Nouraie, Mehdi Sahebkar, Amirhossein Varshoee Tabrizi, Fatemeh Kerachian, Mohammad Amin PLoS One Research Article A large number of tumor-related methylated genes have been suggested to be of diagnostic and prognostic values for CRC when analyzed in patients' stool samples; however, reported sensitivities and specificities have been inconsistent and widely varied. This meta-analysis was conducted to assess the detection accuracy of stool DNA methylation assay in CRC, early stages of CRC (advanced adenoma, non-advanced adenomas) and hyperplastic polyps, separately. We searched MEDLINE, Web of Science, Scopus and Google Scholar databases until May 1, 2016. From 469 publications obtained in the initial literature search, 38 studies were included in the final analysis involving 4867 individuals. The true positive, false positive, true negative and false negative of a stool-based DNA methylation biomarker using all single-gene tests considering a certain gene; regardless of a specific gene were pooled and studied in different categories. The sensitivity of different genes in detecting different stages of CRC ranged from 0% to 100% and the specificities ranged from 73% to 100%. Our results elucidated that SFRP1 and SFRP2 methylation possessed promising accuracy for detection of not only CRC (DOR: 31.67; 95%CI, 12.31–81.49 and DOR: 35.36; 95%CI, 18.71–66.84, respectively) but also the early stages of cancer, adenoma (DOR: 19.72; 95%CI, 6.68–58.25 and DOR: 13.20; 95%CI, 6.01–28.00, respectively). Besides, NDRG4 could be also considered as a significant diagnostic marker gene in CRC (DOR: 24.37; 95%CI, 10.11–58.73) and VIM in adenoma (DOR: 15.21; 95%CI, 2.72–85.10). In conclusion, stool DNA hypermethylation assay based on the candidate genes SFRP1, SFRP2, NDRG4 and VIM could offer potential diagnostic value for CRC based on the findings of this meta-analysis. Public Library of Science 2018-07-19 /pmc/articles/PMC6053185/ /pubmed/30024936 http://dx.doi.org/10.1371/journal.pone.0200735 Text en © 2018 Mojtabanezhad Shariatpanahi et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Mojtabanezhad Shariatpanahi, Afsaneh
Yassi, Maryam
Nouraie, Mehdi
Sahebkar, Amirhossein
Varshoee Tabrizi, Fatemeh
Kerachian, Mohammad Amin
The importance of stool DNA methylation in colorectal cancer diagnosis: A meta-analysis
title The importance of stool DNA methylation in colorectal cancer diagnosis: A meta-analysis
title_full The importance of stool DNA methylation in colorectal cancer diagnosis: A meta-analysis
title_fullStr The importance of stool DNA methylation in colorectal cancer diagnosis: A meta-analysis
title_full_unstemmed The importance of stool DNA methylation in colorectal cancer diagnosis: A meta-analysis
title_short The importance of stool DNA methylation in colorectal cancer diagnosis: A meta-analysis
title_sort importance of stool dna methylation in colorectal cancer diagnosis: a meta-analysis
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6053185/
https://www.ncbi.nlm.nih.gov/pubmed/30024936
http://dx.doi.org/10.1371/journal.pone.0200735
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