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Response Surface Methodology-Genetic Algorithm Based Medium Optimization, Purification, and Characterization of Cholesterol Oxidase from Streptomyces rimosus

The applicability of the statistical tools coupled with artificial intelligence techniques was tested to optimize the critical medium components for the production of extracellular cholesterol oxidase (COD; an enzyme of commercial interest) from Streptomyces rimosus MTCC 10792. The initial medium co...

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Autores principales: Srivastava, Akanksha, Singh, Vineeta, Haque, Shafiul, Pandey, Smriti, Mishra, Manisha, Jawed, Arshad, Shukla, P. K., Singh, P. K., Tripathi, C. K. M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6053457/
https://www.ncbi.nlm.nih.gov/pubmed/30026563
http://dx.doi.org/10.1038/s41598-018-29241-9
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author Srivastava, Akanksha
Singh, Vineeta
Haque, Shafiul
Pandey, Smriti
Mishra, Manisha
Jawed, Arshad
Shukla, P. K.
Singh, P. K.
Tripathi, C. K. M.
author_facet Srivastava, Akanksha
Singh, Vineeta
Haque, Shafiul
Pandey, Smriti
Mishra, Manisha
Jawed, Arshad
Shukla, P. K.
Singh, P. K.
Tripathi, C. K. M.
author_sort Srivastava, Akanksha
collection PubMed
description The applicability of the statistical tools coupled with artificial intelligence techniques was tested to optimize the critical medium components for the production of extracellular cholesterol oxidase (COD; an enzyme of commercial interest) from Streptomyces rimosus MTCC 10792. The initial medium component screening was performed using Placket-Burman design with yeast extract, dextrose, starch and ammonium carbonate as significant factors. Response surface methodology (RSM) was attempted to develop a statistical model with a significant coefficient of determination (R(2) = 0.89847), followed by model optimization using Genetic Algorithm (GA). RSM-GA based optimization approach predicted that the combination of yeast extract, dextrose, starch and ammonium carbonate at concentrations 0.99, 0.8, 0.1, and 0.05 g/100 ml respectively, has resulted in 3.6 folds increase in COD production (5.41 U/ml) in comparison with the un-optimized medium (1.5 U/ml). COD was purified 10.34 folds having specific activity of 12.37 U/mg with molecular mass of 54 kDa. The enzyme was stable at pH 7.0 and 40 °C temperature. The apparent Michaelis constant (K(m)) and V(max) values of COD were 0.043 mM and 2.21 μmol/min/mg, respectively. This is the first communication reporting RSM-GA based medium optimization, purification and characterization of COD by S. rimosus isolated from the forest soil of eastern India.
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spelling pubmed-60534572018-07-23 Response Surface Methodology-Genetic Algorithm Based Medium Optimization, Purification, and Characterization of Cholesterol Oxidase from Streptomyces rimosus Srivastava, Akanksha Singh, Vineeta Haque, Shafiul Pandey, Smriti Mishra, Manisha Jawed, Arshad Shukla, P. K. Singh, P. K. Tripathi, C. K. M. Sci Rep Article The applicability of the statistical tools coupled with artificial intelligence techniques was tested to optimize the critical medium components for the production of extracellular cholesterol oxidase (COD; an enzyme of commercial interest) from Streptomyces rimosus MTCC 10792. The initial medium component screening was performed using Placket-Burman design with yeast extract, dextrose, starch and ammonium carbonate as significant factors. Response surface methodology (RSM) was attempted to develop a statistical model with a significant coefficient of determination (R(2) = 0.89847), followed by model optimization using Genetic Algorithm (GA). RSM-GA based optimization approach predicted that the combination of yeast extract, dextrose, starch and ammonium carbonate at concentrations 0.99, 0.8, 0.1, and 0.05 g/100 ml respectively, has resulted in 3.6 folds increase in COD production (5.41 U/ml) in comparison with the un-optimized medium (1.5 U/ml). COD was purified 10.34 folds having specific activity of 12.37 U/mg with molecular mass of 54 kDa. The enzyme was stable at pH 7.0 and 40 °C temperature. The apparent Michaelis constant (K(m)) and V(max) values of COD were 0.043 mM and 2.21 μmol/min/mg, respectively. This is the first communication reporting RSM-GA based medium optimization, purification and characterization of COD by S. rimosus isolated from the forest soil of eastern India. Nature Publishing Group UK 2018-07-19 /pmc/articles/PMC6053457/ /pubmed/30026563 http://dx.doi.org/10.1038/s41598-018-29241-9 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Srivastava, Akanksha
Singh, Vineeta
Haque, Shafiul
Pandey, Smriti
Mishra, Manisha
Jawed, Arshad
Shukla, P. K.
Singh, P. K.
Tripathi, C. K. M.
Response Surface Methodology-Genetic Algorithm Based Medium Optimization, Purification, and Characterization of Cholesterol Oxidase from Streptomyces rimosus
title Response Surface Methodology-Genetic Algorithm Based Medium Optimization, Purification, and Characterization of Cholesterol Oxidase from Streptomyces rimosus
title_full Response Surface Methodology-Genetic Algorithm Based Medium Optimization, Purification, and Characterization of Cholesterol Oxidase from Streptomyces rimosus
title_fullStr Response Surface Methodology-Genetic Algorithm Based Medium Optimization, Purification, and Characterization of Cholesterol Oxidase from Streptomyces rimosus
title_full_unstemmed Response Surface Methodology-Genetic Algorithm Based Medium Optimization, Purification, and Characterization of Cholesterol Oxidase from Streptomyces rimosus
title_short Response Surface Methodology-Genetic Algorithm Based Medium Optimization, Purification, and Characterization of Cholesterol Oxidase from Streptomyces rimosus
title_sort response surface methodology-genetic algorithm based medium optimization, purification, and characterization of cholesterol oxidase from streptomyces rimosus
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6053457/
https://www.ncbi.nlm.nih.gov/pubmed/30026563
http://dx.doi.org/10.1038/s41598-018-29241-9
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