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Circ2Disease: a manually curated database of experimentally validated circRNAs in human disease

Circular RNAs (circRNAs), a new class of regulatory noncoding RNAs, play important roles in human diseases. While a growing number of circRNAs have been characterized with biological functions, it is necessary to integrate all the information to facilitate studies on circRNA functions and regulatory...

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Autores principales: Yao, Dongxia, Zhang, Lei, Zheng, Mengyue, Sun, Xiwei, Lu, Yan, Liu, Pengyuan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6054656/
https://www.ncbi.nlm.nih.gov/pubmed/30030469
http://dx.doi.org/10.1038/s41598-018-29360-3
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author Yao, Dongxia
Zhang, Lei
Zheng, Mengyue
Sun, Xiwei
Lu, Yan
Liu, Pengyuan
author_facet Yao, Dongxia
Zhang, Lei
Zheng, Mengyue
Sun, Xiwei
Lu, Yan
Liu, Pengyuan
author_sort Yao, Dongxia
collection PubMed
description Circular RNAs (circRNAs), a new class of regulatory noncoding RNAs, play important roles in human diseases. While a growing number of circRNAs have been characterized with biological functions, it is necessary to integrate all the information to facilitate studies on circRNA functions and regulatory networks in human diseases. Circ2Disease database contains 273 manually curated associations between 237 circRNAs and 54 human diseases with strong experimental evidence from 120 studies. Each association includes circRNA name, disease name, expression pattern, experimental method, a brief functional description of the circRNA-disease relationship, and other detailed information. The experimentally validated miRNAs that may be ‘sponged up’ by these circRNAs and their validated targets were also integrated to form a comprehensive regulatory network. Circ2Disease provides a user-friendly interface to browse, search, analyze regulatory network and download data. With the rapidly increasing interest in circRNAs, Circ2Disease will significantly improve our understanding of circRNA deregulation in diseases and is a useful resource for studying posttranscriptional regulatory roles of circRNAs in human diseases.
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spelling pubmed-60546562018-07-23 Circ2Disease: a manually curated database of experimentally validated circRNAs in human disease Yao, Dongxia Zhang, Lei Zheng, Mengyue Sun, Xiwei Lu, Yan Liu, Pengyuan Sci Rep Article Circular RNAs (circRNAs), a new class of regulatory noncoding RNAs, play important roles in human diseases. While a growing number of circRNAs have been characterized with biological functions, it is necessary to integrate all the information to facilitate studies on circRNA functions and regulatory networks in human diseases. Circ2Disease database contains 273 manually curated associations between 237 circRNAs and 54 human diseases with strong experimental evidence from 120 studies. Each association includes circRNA name, disease name, expression pattern, experimental method, a brief functional description of the circRNA-disease relationship, and other detailed information. The experimentally validated miRNAs that may be ‘sponged up’ by these circRNAs and their validated targets were also integrated to form a comprehensive regulatory network. Circ2Disease provides a user-friendly interface to browse, search, analyze regulatory network and download data. With the rapidly increasing interest in circRNAs, Circ2Disease will significantly improve our understanding of circRNA deregulation in diseases and is a useful resource for studying posttranscriptional regulatory roles of circRNAs in human diseases. Nature Publishing Group UK 2018-07-20 /pmc/articles/PMC6054656/ /pubmed/30030469 http://dx.doi.org/10.1038/s41598-018-29360-3 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Yao, Dongxia
Zhang, Lei
Zheng, Mengyue
Sun, Xiwei
Lu, Yan
Liu, Pengyuan
Circ2Disease: a manually curated database of experimentally validated circRNAs in human disease
title Circ2Disease: a manually curated database of experimentally validated circRNAs in human disease
title_full Circ2Disease: a manually curated database of experimentally validated circRNAs in human disease
title_fullStr Circ2Disease: a manually curated database of experimentally validated circRNAs in human disease
title_full_unstemmed Circ2Disease: a manually curated database of experimentally validated circRNAs in human disease
title_short Circ2Disease: a manually curated database of experimentally validated circRNAs in human disease
title_sort circ2disease: a manually curated database of experimentally validated circrnas in human disease
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6054656/
https://www.ncbi.nlm.nih.gov/pubmed/30030469
http://dx.doi.org/10.1038/s41598-018-29360-3
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