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Isolation and characterization of microsatellite loci from Oxytropis diversifolia (Fabaceae)

PREMISE OF THE STUDY: Microsatellite primers were developed for a perennial legume from northern China, Oxytropis diversifolia (Fabaceae), to investigate population genetic structure of this taxon, as well as potential hybridization events with closely related taxa in this genus. METHODS AND RESULTS...

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Detalles Bibliográficos
Autores principales: Wang, Hui, Yang, Han, Liu, Pei‐Liang, Su, Chun, Xiao, Liang, Chang, Zhao‐Yang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6055551/
https://www.ncbi.nlm.nih.gov/pubmed/30131910
http://dx.doi.org/10.1002/aps3.1168
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author Wang, Hui
Yang, Han
Liu, Pei‐Liang
Su, Chun
Xiao, Liang
Chang, Zhao‐Yang
author_facet Wang, Hui
Yang, Han
Liu, Pei‐Liang
Su, Chun
Xiao, Liang
Chang, Zhao‐Yang
author_sort Wang, Hui
collection PubMed
description PREMISE OF THE STUDY: Microsatellite primers were developed for a perennial legume from northern China, Oxytropis diversifolia (Fabaceae), to investigate population genetic structure of this taxon, as well as potential hybridization events with closely related taxa in this genus. METHODS AND RESULTS: One hundred and five primer pairs were designed from Illumina sequence data and screened for suitability. Fifteen of these primer pairs were polymorphic, and these primers amplified tri‐, tetra‐, and pentanucleotide repeats with 10–56 alleles per locus. Cross‐amplification tests in three other Oxytropis species from northern China (O. leptophylla, O. neimonggolica, and O. squammulosa) revealed that all of these loci can be amplified successfully and show polymorphism. CONCLUSIONS: These primer pairs can be used to assess the genetic diversity and population structure in future studies of O. diversifolia, as well as studies of potential hybridization events with closely related taxa in this genus.
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spelling pubmed-60555512018-08-21 Isolation and characterization of microsatellite loci from Oxytropis diversifolia (Fabaceae) Wang, Hui Yang, Han Liu, Pei‐Liang Su, Chun Xiao, Liang Chang, Zhao‐Yang Appl Plant Sci Primer Notes PREMISE OF THE STUDY: Microsatellite primers were developed for a perennial legume from northern China, Oxytropis diversifolia (Fabaceae), to investigate population genetic structure of this taxon, as well as potential hybridization events with closely related taxa in this genus. METHODS AND RESULTS: One hundred and five primer pairs were designed from Illumina sequence data and screened for suitability. Fifteen of these primer pairs were polymorphic, and these primers amplified tri‐, tetra‐, and pentanucleotide repeats with 10–56 alleles per locus. Cross‐amplification tests in three other Oxytropis species from northern China (O. leptophylla, O. neimonggolica, and O. squammulosa) revealed that all of these loci can be amplified successfully and show polymorphism. CONCLUSIONS: These primer pairs can be used to assess the genetic diversity and population structure in future studies of O. diversifolia, as well as studies of potential hybridization events with closely related taxa in this genus. John Wiley and Sons Inc. 2018-07-11 /pmc/articles/PMC6055551/ /pubmed/30131910 http://dx.doi.org/10.1002/aps3.1168 Text en Applications in Plant Sciences is published by Wiley Periodicals, Inc. on behalf of the Botanical Society of America This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Primer Notes
Wang, Hui
Yang, Han
Liu, Pei‐Liang
Su, Chun
Xiao, Liang
Chang, Zhao‐Yang
Isolation and characterization of microsatellite loci from Oxytropis diversifolia (Fabaceae)
title Isolation and characterization of microsatellite loci from Oxytropis diversifolia (Fabaceae)
title_full Isolation and characterization of microsatellite loci from Oxytropis diversifolia (Fabaceae)
title_fullStr Isolation and characterization of microsatellite loci from Oxytropis diversifolia (Fabaceae)
title_full_unstemmed Isolation and characterization of microsatellite loci from Oxytropis diversifolia (Fabaceae)
title_short Isolation and characterization of microsatellite loci from Oxytropis diversifolia (Fabaceae)
title_sort isolation and characterization of microsatellite loci from oxytropis diversifolia (fabaceae)
topic Primer Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6055551/
https://www.ncbi.nlm.nih.gov/pubmed/30131910
http://dx.doi.org/10.1002/aps3.1168
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