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Development of 15 microsatellite markers in Acer triflorum (Aceraceae) and cross‐amplification in congeneric species
PREMISE OF THE STUDY: Acer (Aceraceae) is an important genus in forest ecosystems in the Northern Hemisphere. In China, 151 species have been reported, and approximately 61 species are endemic. Thus, China is considered to host the greatest diversity of Acer, but markers are needed to evaluate the g...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6055552/ https://www.ncbi.nlm.nih.gov/pubmed/30131908 http://dx.doi.org/10.1002/aps3.1166 |
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author | Wang, Hua‐Ying Wei, Bai‐Ying Xiao, Hong‐Xing |
author_facet | Wang, Hua‐Ying Wei, Bai‐Ying Xiao, Hong‐Xing |
author_sort | Wang, Hua‐Ying |
collection | PubMed |
description | PREMISE OF THE STUDY: Acer (Aceraceae) is an important genus in forest ecosystems in the Northern Hemisphere. In China, 151 species have been reported, and approximately 61 species are endemic. Thus, China is considered to host the greatest diversity of Acer, but markers are needed to evaluate the genetic structure and genetic diversity of these populations of wild Acer species. METHODS AND RESULTS: Using an enriched genomic library, we developed and characterized 15 microsatellite primers for A. triflorum, 10 of which were polymorphic. The number of alleles varied from one to nine. The levels of observed heterozygosity and expected heterozygosity per locus ranged from 0.000 to 1.000 and 0.000 to 0.826, respectively. Most primers also successfully amplified in A. ginnala, A. griseum, A. mandshuricum, A. pseudosieboldianum, A. sinopurpurascens, A. tegmentosum, and A. ukurunduense. CONCLUSIONS: These markers from A. triflorum will provide an opportunity to study genetic diversity and genetic structure in the genus Acer. |
format | Online Article Text |
id | pubmed-6055552 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-60555522018-08-21 Development of 15 microsatellite markers in Acer triflorum (Aceraceae) and cross‐amplification in congeneric species Wang, Hua‐Ying Wei, Bai‐Ying Xiao, Hong‐Xing Appl Plant Sci Primer Notes PREMISE OF THE STUDY: Acer (Aceraceae) is an important genus in forest ecosystems in the Northern Hemisphere. In China, 151 species have been reported, and approximately 61 species are endemic. Thus, China is considered to host the greatest diversity of Acer, but markers are needed to evaluate the genetic structure and genetic diversity of these populations of wild Acer species. METHODS AND RESULTS: Using an enriched genomic library, we developed and characterized 15 microsatellite primers for A. triflorum, 10 of which were polymorphic. The number of alleles varied from one to nine. The levels of observed heterozygosity and expected heterozygosity per locus ranged from 0.000 to 1.000 and 0.000 to 0.826, respectively. Most primers also successfully amplified in A. ginnala, A. griseum, A. mandshuricum, A. pseudosieboldianum, A. sinopurpurascens, A. tegmentosum, and A. ukurunduense. CONCLUSIONS: These markers from A. triflorum will provide an opportunity to study genetic diversity and genetic structure in the genus Acer. John Wiley and Sons Inc. 2018-07-16 /pmc/articles/PMC6055552/ /pubmed/30131908 http://dx.doi.org/10.1002/aps3.1166 Text en Applications in Plant Sciences is published by Wiley Periodicals, Inc. on behalf of the Botanical Society of America This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes. |
spellingShingle | Primer Notes Wang, Hua‐Ying Wei, Bai‐Ying Xiao, Hong‐Xing Development of 15 microsatellite markers in Acer triflorum (Aceraceae) and cross‐amplification in congeneric species |
title | Development of 15 microsatellite markers in Acer triflorum (Aceraceae) and cross‐amplification in congeneric species |
title_full | Development of 15 microsatellite markers in Acer triflorum (Aceraceae) and cross‐amplification in congeneric species |
title_fullStr | Development of 15 microsatellite markers in Acer triflorum (Aceraceae) and cross‐amplification in congeneric species |
title_full_unstemmed | Development of 15 microsatellite markers in Acer triflorum (Aceraceae) and cross‐amplification in congeneric species |
title_short | Development of 15 microsatellite markers in Acer triflorum (Aceraceae) and cross‐amplification in congeneric species |
title_sort | development of 15 microsatellite markers in acer triflorum (aceraceae) and cross‐amplification in congeneric species |
topic | Primer Notes |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6055552/ https://www.ncbi.nlm.nih.gov/pubmed/30131908 http://dx.doi.org/10.1002/aps3.1166 |
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