Cargando…

Development of 15 microsatellite markers in Acer triflorum (Aceraceae) and cross‐amplification in congeneric species

PREMISE OF THE STUDY: Acer (Aceraceae) is an important genus in forest ecosystems in the Northern Hemisphere. In China, 151 species have been reported, and approximately 61 species are endemic. Thus, China is considered to host the greatest diversity of Acer, but markers are needed to evaluate the g...

Descripción completa

Detalles Bibliográficos
Autores principales: Wang, Hua‐Ying, Wei, Bai‐Ying, Xiao, Hong‐Xing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6055552/
https://www.ncbi.nlm.nih.gov/pubmed/30131908
http://dx.doi.org/10.1002/aps3.1166
_version_ 1783341193870966784
author Wang, Hua‐Ying
Wei, Bai‐Ying
Xiao, Hong‐Xing
author_facet Wang, Hua‐Ying
Wei, Bai‐Ying
Xiao, Hong‐Xing
author_sort Wang, Hua‐Ying
collection PubMed
description PREMISE OF THE STUDY: Acer (Aceraceae) is an important genus in forest ecosystems in the Northern Hemisphere. In China, 151 species have been reported, and approximately 61 species are endemic. Thus, China is considered to host the greatest diversity of Acer, but markers are needed to evaluate the genetic structure and genetic diversity of these populations of wild Acer species. METHODS AND RESULTS: Using an enriched genomic library, we developed and characterized 15 microsatellite primers for A. triflorum, 10 of which were polymorphic. The number of alleles varied from one to nine. The levels of observed heterozygosity and expected heterozygosity per locus ranged from 0.000 to 1.000 and 0.000 to 0.826, respectively. Most primers also successfully amplified in A. ginnala, A. griseum, A. mandshuricum, A. pseudosieboldianum, A. sinopurpurascens, A. tegmentosum, and A. ukurunduense. CONCLUSIONS: These markers from A. triflorum will provide an opportunity to study genetic diversity and genetic structure in the genus Acer.
format Online
Article
Text
id pubmed-6055552
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-60555522018-08-21 Development of 15 microsatellite markers in Acer triflorum (Aceraceae) and cross‐amplification in congeneric species Wang, Hua‐Ying Wei, Bai‐Ying Xiao, Hong‐Xing Appl Plant Sci Primer Notes PREMISE OF THE STUDY: Acer (Aceraceae) is an important genus in forest ecosystems in the Northern Hemisphere. In China, 151 species have been reported, and approximately 61 species are endemic. Thus, China is considered to host the greatest diversity of Acer, but markers are needed to evaluate the genetic structure and genetic diversity of these populations of wild Acer species. METHODS AND RESULTS: Using an enriched genomic library, we developed and characterized 15 microsatellite primers for A. triflorum, 10 of which were polymorphic. The number of alleles varied from one to nine. The levels of observed heterozygosity and expected heterozygosity per locus ranged from 0.000 to 1.000 and 0.000 to 0.826, respectively. Most primers also successfully amplified in A. ginnala, A. griseum, A. mandshuricum, A. pseudosieboldianum, A. sinopurpurascens, A. tegmentosum, and A. ukurunduense. CONCLUSIONS: These markers from A. triflorum will provide an opportunity to study genetic diversity and genetic structure in the genus Acer. John Wiley and Sons Inc. 2018-07-16 /pmc/articles/PMC6055552/ /pubmed/30131908 http://dx.doi.org/10.1002/aps3.1166 Text en Applications in Plant Sciences is published by Wiley Periodicals, Inc. on behalf of the Botanical Society of America This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Primer Notes
Wang, Hua‐Ying
Wei, Bai‐Ying
Xiao, Hong‐Xing
Development of 15 microsatellite markers in Acer triflorum (Aceraceae) and cross‐amplification in congeneric species
title Development of 15 microsatellite markers in Acer triflorum (Aceraceae) and cross‐amplification in congeneric species
title_full Development of 15 microsatellite markers in Acer triflorum (Aceraceae) and cross‐amplification in congeneric species
title_fullStr Development of 15 microsatellite markers in Acer triflorum (Aceraceae) and cross‐amplification in congeneric species
title_full_unstemmed Development of 15 microsatellite markers in Acer triflorum (Aceraceae) and cross‐amplification in congeneric species
title_short Development of 15 microsatellite markers in Acer triflorum (Aceraceae) and cross‐amplification in congeneric species
title_sort development of 15 microsatellite markers in acer triflorum (aceraceae) and cross‐amplification in congeneric species
topic Primer Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6055552/
https://www.ncbi.nlm.nih.gov/pubmed/30131908
http://dx.doi.org/10.1002/aps3.1166
work_keys_str_mv AT wanghuaying developmentof15microsatellitemarkersinacertriflorumaceraceaeandcrossamplificationincongenericspecies
AT weibaiying developmentof15microsatellitemarkersinacertriflorumaceraceaeandcrossamplificationincongenericspecies
AT xiaohongxing developmentof15microsatellitemarkersinacertriflorumaceraceaeandcrossamplificationincongenericspecies