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Development of 16 microsatellite markers for the Korean endemic Vicia hirticalycina (Fabaceae)
PREMISE OF THE STUDY: Vicia hirticalycina (Fabaceae) is a narrowly endemic species restricted to mountain valleys of southern Korea. To investigate its fine‐scale genetic diversity and differentiation in Korea, we developed polymorphic microsatellite markers. METHODS AND RESULTS: Sixteen polymorphic...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6055556/ https://www.ncbi.nlm.nih.gov/pubmed/30131912 http://dx.doi.org/10.1002/aps3.1170 |
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author | Park, Jong‐Won Choi, In‐Su Choi, Byoung‐Hee |
author_facet | Park, Jong‐Won Choi, In‐Su Choi, Byoung‐Hee |
author_sort | Park, Jong‐Won |
collection | PubMed |
description | PREMISE OF THE STUDY: Vicia hirticalycina (Fabaceae) is a narrowly endemic species restricted to mountain valleys of southern Korea. To investigate its fine‐scale genetic diversity and differentiation in Korea, we developed polymorphic microsatellite markers. METHODS AND RESULTS: Sixteen polymorphic microsatellite markers were developed from Illumina MiSeq data. In 74 individual plants from four populations, one to seven alleles were expressed for each locus. The levels of observed and expected heterozygosity ranged from 0.000 to 0.778 and from 0.000 to 0.738, respectively. Cross‐amplification was conducted with three related species and seven to 11 markers were successfully amplified. CONCLUSIONS: These new microsatellite markers will be useful in future studies on the population genetics of V. hirticalycina. |
format | Online Article Text |
id | pubmed-6055556 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-60555562018-08-21 Development of 16 microsatellite markers for the Korean endemic Vicia hirticalycina (Fabaceae) Park, Jong‐Won Choi, In‐Su Choi, Byoung‐Hee Appl Plant Sci Primer Notes PREMISE OF THE STUDY: Vicia hirticalycina (Fabaceae) is a narrowly endemic species restricted to mountain valleys of southern Korea. To investigate its fine‐scale genetic diversity and differentiation in Korea, we developed polymorphic microsatellite markers. METHODS AND RESULTS: Sixteen polymorphic microsatellite markers were developed from Illumina MiSeq data. In 74 individual plants from four populations, one to seven alleles were expressed for each locus. The levels of observed and expected heterozygosity ranged from 0.000 to 0.778 and from 0.000 to 0.738, respectively. Cross‐amplification was conducted with three related species and seven to 11 markers were successfully amplified. CONCLUSIONS: These new microsatellite markers will be useful in future studies on the population genetics of V. hirticalycina. John Wiley and Sons Inc. 2018-07-23 /pmc/articles/PMC6055556/ /pubmed/30131912 http://dx.doi.org/10.1002/aps3.1170 Text en Applications in Plant Sciences is published by Wiley Periodicals, Inc. on behalf of the Botanical Society of America This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made. |
spellingShingle | Primer Notes Park, Jong‐Won Choi, In‐Su Choi, Byoung‐Hee Development of 16 microsatellite markers for the Korean endemic Vicia hirticalycina (Fabaceae) |
title | Development of 16 microsatellite markers for the Korean endemic Vicia hirticalycina (Fabaceae) |
title_full | Development of 16 microsatellite markers for the Korean endemic Vicia hirticalycina (Fabaceae) |
title_fullStr | Development of 16 microsatellite markers for the Korean endemic Vicia hirticalycina (Fabaceae) |
title_full_unstemmed | Development of 16 microsatellite markers for the Korean endemic Vicia hirticalycina (Fabaceae) |
title_short | Development of 16 microsatellite markers for the Korean endemic Vicia hirticalycina (Fabaceae) |
title_sort | development of 16 microsatellite markers for the korean endemic vicia hirticalycina (fabaceae) |
topic | Primer Notes |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6055556/ https://www.ncbi.nlm.nih.gov/pubmed/30131912 http://dx.doi.org/10.1002/aps3.1170 |
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