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Gating mechanisms during actin filament elongation by formins

Formins play an important role in the polymerization of unbranched actin filaments, and particular formins slow elongation by 5–95%. We studied the interactions between actin and the FH2 domains of formins Cdc12, Bni1 and mDia1 to understand the factors underlying their different rates of polymeriza...

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Autores principales: Aydin, Fikret, Courtemanche, Naomi, Pollard, Thomas D, Voth, Gregory A
Formato: Online Artículo Texto
Lenguaje:English
Publicado: eLife Sciences Publications, Ltd 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6056239/
https://www.ncbi.nlm.nih.gov/pubmed/30035712
http://dx.doi.org/10.7554/eLife.37342
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author Aydin, Fikret
Courtemanche, Naomi
Pollard, Thomas D
Voth, Gregory A
author_facet Aydin, Fikret
Courtemanche, Naomi
Pollard, Thomas D
Voth, Gregory A
author_sort Aydin, Fikret
collection PubMed
description Formins play an important role in the polymerization of unbranched actin filaments, and particular formins slow elongation by 5–95%. We studied the interactions between actin and the FH2 domains of formins Cdc12, Bni1 and mDia1 to understand the factors underlying their different rates of polymerization. All-atom molecular dynamics simulations revealed two factors that influence actin filament elongation and correlate with the rates of elongation. First, FH2 domains can sterically block the addition of new actin subunits. Second, FH2 domains flatten the helical twist of the terminal actin subunits, making the end less favorable for subunit addition. Coarse-grained simulations over longer time scales support these conclusions. The simulations show that filaments spend time in states that either allow or block elongation. The rate of elongation is a time-average of the degree to which the formin compromises subunit addition rather than the formin-actin complex literally being in ‘open’ or ‘closed’ states.
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spelling pubmed-60562392018-07-25 Gating mechanisms during actin filament elongation by formins Aydin, Fikret Courtemanche, Naomi Pollard, Thomas D Voth, Gregory A eLife Structural Biology and Molecular Biophysics Formins play an important role in the polymerization of unbranched actin filaments, and particular formins slow elongation by 5–95%. We studied the interactions between actin and the FH2 domains of formins Cdc12, Bni1 and mDia1 to understand the factors underlying their different rates of polymerization. All-atom molecular dynamics simulations revealed two factors that influence actin filament elongation and correlate with the rates of elongation. First, FH2 domains can sterically block the addition of new actin subunits. Second, FH2 domains flatten the helical twist of the terminal actin subunits, making the end less favorable for subunit addition. Coarse-grained simulations over longer time scales support these conclusions. The simulations show that filaments spend time in states that either allow or block elongation. The rate of elongation is a time-average of the degree to which the formin compromises subunit addition rather than the formin-actin complex literally being in ‘open’ or ‘closed’ states. eLife Sciences Publications, Ltd 2018-07-23 /pmc/articles/PMC6056239/ /pubmed/30035712 http://dx.doi.org/10.7554/eLife.37342 Text en © 2018, Aydin et al http://creativecommons.org/licenses/by/4.0/ http://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use and redistribution provided that the original author and source are credited.
spellingShingle Structural Biology and Molecular Biophysics
Aydin, Fikret
Courtemanche, Naomi
Pollard, Thomas D
Voth, Gregory A
Gating mechanisms during actin filament elongation by formins
title Gating mechanisms during actin filament elongation by formins
title_full Gating mechanisms during actin filament elongation by formins
title_fullStr Gating mechanisms during actin filament elongation by formins
title_full_unstemmed Gating mechanisms during actin filament elongation by formins
title_short Gating mechanisms during actin filament elongation by formins
title_sort gating mechanisms during actin filament elongation by formins
topic Structural Biology and Molecular Biophysics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6056239/
https://www.ncbi.nlm.nih.gov/pubmed/30035712
http://dx.doi.org/10.7554/eLife.37342
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