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Reaction and diffusion thermodynamics explain optimal temperatures of biochemical reactions

Ubiquitous declines in biochemical reaction rates above optimal temperatures (T(opt)) are normally attributed to enzyme state changes, but such mechanisms appear inadequate to explain pervasive T(opt) well below enzyme deactivation temperatures (T(den)). Here, a meta-analysis of 92 experimental stud...

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Autor principal: Ritchie, Mark E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6056565/
https://www.ncbi.nlm.nih.gov/pubmed/30038415
http://dx.doi.org/10.1038/s41598-018-28833-9
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author Ritchie, Mark E.
author_facet Ritchie, Mark E.
author_sort Ritchie, Mark E.
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description Ubiquitous declines in biochemical reaction rates above optimal temperatures (T(opt)) are normally attributed to enzyme state changes, but such mechanisms appear inadequate to explain pervasive T(opt) well below enzyme deactivation temperatures (T(den)). Here, a meta-analysis of 92 experimental studies shows that product formation responds twice as strongly to increased temperature than diffusion or transport. This response difference has multiple consequences for biochemical reactions, such as potential shifts in the factors limiting reactions as temperature increases and reaction-diffusion dynamics that predict potential product inhibition and limitation of the reaction by entropy production at temperatures below T(den). Maximizing entropy production by the reaction predicts T(opt) that depend on enzyme concentration and efficiency as well as reaction favorability, which are patterns not predicted by mechanisms of enzyme state change. However, these predictions are strongly supported by patterns in a meta-analysis of 121 enzyme kinetic studies. Consequently, reaction-diffusion thermodynamics and entropy production may constrain organism performance at higher temperatures, yielding temperature optima of life that may depend on reaction characteristics and environmental features rather than just enzyme state changes.
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spelling pubmed-60565652018-07-30 Reaction and diffusion thermodynamics explain optimal temperatures of biochemical reactions Ritchie, Mark E. Sci Rep Article Ubiquitous declines in biochemical reaction rates above optimal temperatures (T(opt)) are normally attributed to enzyme state changes, but such mechanisms appear inadequate to explain pervasive T(opt) well below enzyme deactivation temperatures (T(den)). Here, a meta-analysis of 92 experimental studies shows that product formation responds twice as strongly to increased temperature than diffusion or transport. This response difference has multiple consequences for biochemical reactions, such as potential shifts in the factors limiting reactions as temperature increases and reaction-diffusion dynamics that predict potential product inhibition and limitation of the reaction by entropy production at temperatures below T(den). Maximizing entropy production by the reaction predicts T(opt) that depend on enzyme concentration and efficiency as well as reaction favorability, which are patterns not predicted by mechanisms of enzyme state change. However, these predictions are strongly supported by patterns in a meta-analysis of 121 enzyme kinetic studies. Consequently, reaction-diffusion thermodynamics and entropy production may constrain organism performance at higher temperatures, yielding temperature optima of life that may depend on reaction characteristics and environmental features rather than just enzyme state changes. Nature Publishing Group UK 2018-07-23 /pmc/articles/PMC6056565/ /pubmed/30038415 http://dx.doi.org/10.1038/s41598-018-28833-9 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Ritchie, Mark E.
Reaction and diffusion thermodynamics explain optimal temperatures of biochemical reactions
title Reaction and diffusion thermodynamics explain optimal temperatures of biochemical reactions
title_full Reaction and diffusion thermodynamics explain optimal temperatures of biochemical reactions
title_fullStr Reaction and diffusion thermodynamics explain optimal temperatures of biochemical reactions
title_full_unstemmed Reaction and diffusion thermodynamics explain optimal temperatures of biochemical reactions
title_short Reaction and diffusion thermodynamics explain optimal temperatures of biochemical reactions
title_sort reaction and diffusion thermodynamics explain optimal temperatures of biochemical reactions
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6056565/
https://www.ncbi.nlm.nih.gov/pubmed/30038415
http://dx.doi.org/10.1038/s41598-018-28833-9
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