Cargando…

Mutation allele frequency threshold does not affect prognostic analysis using next-generation sequencing in oral squamous cell carcinoma

BACKGROUND: With the development of sequencing technologies, there may be some disputes on sequencing analysis. The aim of this study was to investigate different allele frequency thresholds of mutations in targeted genes on prognostic analyses using a panel of cancer associated gene exons (CAGE) in...

Descripción completa

Detalles Bibliográficos
Autores principales:	Ma, Jie, Fu, Yong, Tu, Yao-yao, Liu, Ying, Tan, Yi-ran, Ju, Wu-tong, Pickering, Curtis R., Myers, Jeffrey N., Zhang, Zhi-yuan, Zhong, Lai-ping
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2018
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6057048/ https://www.ncbi.nlm.nih.gov/pubmed/30041611 http://dx.doi.org/10.1186/s12885-018-4481-8

Ejemplares similares

Estimation of allele frequency and association mapping using next-generation sequencing data
por: Kim, Su Yeon, et al.
Publicado: (2011)

Estimating Allele Frequency from Next-Generation Sequencing of Pooled Mitochondrial DNA Samples
por: Wang, Tao, et al.
Publicado: (2011)

Systematic evaluation of gene variants linked to hearing loss based on allele frequency threshold and filtering allele frequency
por: Rim, John Hoon, et al.
Publicado: (2019)

Five Percent Variant Allele Frequency Is a Reliable Reporting Threshold for TP53 Variants Detected by Next Generation Sequencing in Chronic Lymphocytic Leukemia in the Clinical Setting
por: Pandzic, Tatjana, et al.
Publicado: (2022)

ABO allele-level frequency estimation based on population-scale genotyping by next generation sequencing
por: Lang, Kathrin, et al.
Publicado: (2016)

Validation of SNP Allele Frequencies Determined by Pooled Next-Generation Sequencing in Natural Populations of a Non-Model Plant Species
por: Rellstab, Christian, et al.
Publicado: (2013)

Correcting Bias in Allele Frequency Estimates Due to an Observation Threshold: A Markov Chain Analysis
por: Gossmann, Toni I., et al.
Publicado: (2022)

Allele-specific copy number profiling by next-generation DNA sequencing
por: Chen, Hao, et al.
Publicado: (2015)

Huvariome: a web server resource of whole genome next-generation sequencing allelic frequencies to aid in pathological candidate gene selection
por: Stubbs, Andrew, et al.
Publicado: (2012)

Sequence variations, flanking region mutations, and allele frequency at 31 autosomal STRs in the central Indian population by next generation sequencing (NGS)
por: Dash, Hirak Ranjan, et al.
Publicado: (2021)

Genotyping of canine MHC gene DLA‐88 by next‐generation sequencing reveals high frequencies of new allele discovery and gene duplication
por: Pyo, Chul‐Woo, et al.
Publicado: (2022)

Improvement in detection of minor alleles in next generation sequencing by base quality recalibration
por: Ni, Shengyu, et al.
Publicado: (2016)

ASEQ: fast allele-specific studies from next-generation sequencing data
por: Romanel, Alessandro, et al.
Publicado: (2015)

Characterization of the novel HLA‐C*14:124 allele by next generation sequencing
por: Ulrich, Silvia, et al.
Publicado: (2021)

Analysis of the Genomic Sequence of ABO Allele Using Next-Generation Sequencing Method
por: He, Yanmin, et al.
Publicado: (2022)

Pool-hmm: a Python program for estimating the allele frequency spectrum and detecting selective sweeps from next generation sequencing of pooled samples
por: Boitard, Simon, et al.
Publicado: (2013)

GWAS Significance Thresholds for Deep Phenotyping Studies Can Depend Upon Minor Allele Frequencies and Sample Size
por: Asif, Huma, et al.
Publicado: (2020)

Using Next-Generation Sequencing for DNA Barcoding: Capturing Allelic Variation in ITS2
por: Batovska, Jana, et al.
Publicado: (2016)

Killer Immunoglobulin-Like Receptor Allele Determination Using Next-Generation Sequencing Technology
por: Maniangou, Bercelin, et al.
Publicado: (2017)

Next-Generation Sequencing Analysis of GBA1: The Challenge of Detecting Complex Recombinant Alleles
por: Woo, Elizabeth G., et al.
Publicado: (2021)

Identification of the novel HLA‐DPA1*01:88 allele by next‐generation sequencing
por: Tiziana, Galluccio, et al.
Publicado: (2022)

A simple method to estimate the in-house limit of detection for genetic mutations with low allele frequencies in whole-exome sequencing analysis by next-generation sequencing
por: Miura, Takumi, et al.
Publicado: (2021)

India Allele Finder: a web-based annotation tool for identifying common alleles in next-generation sequencing data of Indian origin
por: Zhang, Jimmy F., et al.
Publicado: (2017)

Systematic Characteristic Exploration of the Chimeras Generated in Multiple Displacement Amplification through Next Generation Sequencing Data Reanalysis
por: Tu, Jing, et al.
Publicado: (2015)

Accuracy of Programs for the Determination of Human Leukocyte Antigen Alleles from Next-Generation Sequencing Data
por: Larjo, Antti, et al.
Publicado: (2017)

Novel alleles in the era of next-generation sequencing-based HLA typing calls for standardization and policy
por: Tran, Jenny N., et al.
Publicado: (2023)

Squamousness: Next-generation sequencing reveals shared molecular features across squamous tumor types
por: Schwaederle, Maria, et al.
Publicado: (2015)

Identification of recombination events in outbred species with next-generation sequencing data
por: Tao, Shentong, et al.
Publicado: (2018)

Variant Allele Frequency of Pseudogene-Related Variants in Short-read Next-Generation Sequencing Data May Mislead Genetic Diagnosis: A Case of Shwachman-Diamond Syndrome
por: Lee, Heerah, et al.
Publicado: (2023)

Allele-Specific Thresholds of Eluted Ligands for T-Cell Epitope Prediction
por: Reardon, Brian, et al.
Publicado: (2021)

Prognostic Significance of Comprehensive Gene Mutations and Clinical Characteristics in Adult T-Cell Acute Lymphoblastic Leukemia Based on Next-Generation Sequencing
por: Yin, Hua, et al.
Publicado: (2022)

Mutant GDF15 presents a poor prognostic outcome for patients with oral squamous cell carcinoma
por: Ma, Jie, et al.
Publicado: (2015)

The novel HLA class I allele, HLA‐B*14:110, identified by next‐generation sequencing
por: Laustsen, Mira Marie, et al.
Publicado: (2022)

Approximate next-to-next-to-leading-order threshold resummation in heavy flavor decays
por: Aglietti, U, et al.
Publicado: (2002)

Approximate next-to-next-to-leading-order threshold resummation in heavy flavor decays
por: Aglietti, U, et al.
Publicado: (2002)

A comparative study of next-generation sequencing and fragment analysis for the detection and allelic ratio determination of FLT3 internal tandem duplication
por: Kim, Jin Ju, et al.
Publicado: (2022)

Identification of 8-Digit HLA-A, -B, -C, and -DRB1 Allele and Haplotype Frequencies in Koreans Using the One Lambda AllType Next-Generation Sequencing Kit
por: Choe, Wonho, et al.
Publicado: (2021)

Gene mutations of esophageal squamous cell carcinoma based on next-generation sequencing
por: Wang, Long, et al.
Publicado: (2021)

Next generation sequencing-based salivary biomarkers in oral squamous cell carcinoma
por: Sodnom-Ish, Buyanbileg, et al.
Publicado: (2022)

Diagnosis of lung squamous cell carcinoma based on metagenomic Next-Generation Sequencing
por: Wei, Ping, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_ik2t0sqojno2v2ghohh0akuc3u