Cargando…
Chromatin Accessibility Impacts Transcriptional Reprogramming in Oocytes
Oocytes have a remarkable ability to reactivate silenced genes in somatic cells. However, it is not clear how the chromatin architecture of somatic cells affects this transcriptional reprogramming. Here, we investigated the relationship between the chromatin opening and transcriptional activation. W...
Autores principales: | , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Cell Press
2018
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6057489/ https://www.ncbi.nlm.nih.gov/pubmed/29996092 http://dx.doi.org/10.1016/j.celrep.2018.06.030 |
_version_ | 1783341535945818112 |
---|---|
author | Miyamoto, Kei Nguyen, Khoi T. Allen, George E. Jullien, Jerome Kumar, Dinesh Otani, Tomoki Bradshaw, Charles R. Livesey, Frederick J. Kellis, Manolis Gurdon, John B. |
author_facet | Miyamoto, Kei Nguyen, Khoi T. Allen, George E. Jullien, Jerome Kumar, Dinesh Otani, Tomoki Bradshaw, Charles R. Livesey, Frederick J. Kellis, Manolis Gurdon, John B. |
author_sort | Miyamoto, Kei |
collection | PubMed |
description | Oocytes have a remarkable ability to reactivate silenced genes in somatic cells. However, it is not clear how the chromatin architecture of somatic cells affects this transcriptional reprogramming. Here, we investigated the relationship between the chromatin opening and transcriptional activation. We reveal changes in chromatin accessibility and their relevance to transcriptional reprogramming after transplantation of somatic nuclei into Xenopus oocytes. Genes that are silenced, but have pre-existing open transcription start sites in donor cells, are prone to be activated after nuclear transfer, suggesting that the chromatin signature of somatic nuclei influences transcriptional reprogramming. There are also activated genes associated with new open chromatin sites, and transcription factors in oocytes play an important role in transcriptional reprogramming from such genes. Finally, we show that genes resistant to reprogramming are associated with closed chromatin configurations. We conclude that chromatin accessibility is a central factor for successful transcriptional reprogramming in oocytes. |
format | Online Article Text |
id | pubmed-6057489 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Cell Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-60574892018-07-25 Chromatin Accessibility Impacts Transcriptional Reprogramming in Oocytes Miyamoto, Kei Nguyen, Khoi T. Allen, George E. Jullien, Jerome Kumar, Dinesh Otani, Tomoki Bradshaw, Charles R. Livesey, Frederick J. Kellis, Manolis Gurdon, John B. Cell Rep Article Oocytes have a remarkable ability to reactivate silenced genes in somatic cells. However, it is not clear how the chromatin architecture of somatic cells affects this transcriptional reprogramming. Here, we investigated the relationship between the chromatin opening and transcriptional activation. We reveal changes in chromatin accessibility and their relevance to transcriptional reprogramming after transplantation of somatic nuclei into Xenopus oocytes. Genes that are silenced, but have pre-existing open transcription start sites in donor cells, are prone to be activated after nuclear transfer, suggesting that the chromatin signature of somatic nuclei influences transcriptional reprogramming. There are also activated genes associated with new open chromatin sites, and transcription factors in oocytes play an important role in transcriptional reprogramming from such genes. Finally, we show that genes resistant to reprogramming are associated with closed chromatin configurations. We conclude that chromatin accessibility is a central factor for successful transcriptional reprogramming in oocytes. Cell Press 2018-07-11 /pmc/articles/PMC6057489/ /pubmed/29996092 http://dx.doi.org/10.1016/j.celrep.2018.06.030 Text en © 2018 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Miyamoto, Kei Nguyen, Khoi T. Allen, George E. Jullien, Jerome Kumar, Dinesh Otani, Tomoki Bradshaw, Charles R. Livesey, Frederick J. Kellis, Manolis Gurdon, John B. Chromatin Accessibility Impacts Transcriptional Reprogramming in Oocytes |
title | Chromatin Accessibility Impacts Transcriptional Reprogramming in Oocytes |
title_full | Chromatin Accessibility Impacts Transcriptional Reprogramming in Oocytes |
title_fullStr | Chromatin Accessibility Impacts Transcriptional Reprogramming in Oocytes |
title_full_unstemmed | Chromatin Accessibility Impacts Transcriptional Reprogramming in Oocytes |
title_short | Chromatin Accessibility Impacts Transcriptional Reprogramming in Oocytes |
title_sort | chromatin accessibility impacts transcriptional reprogramming in oocytes |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6057489/ https://www.ncbi.nlm.nih.gov/pubmed/29996092 http://dx.doi.org/10.1016/j.celrep.2018.06.030 |
work_keys_str_mv | AT miyamotokei chromatinaccessibilityimpactstranscriptionalreprogramminginoocytes AT nguyenkhoit chromatinaccessibilityimpactstranscriptionalreprogramminginoocytes AT allengeorgee chromatinaccessibilityimpactstranscriptionalreprogramminginoocytes AT jullienjerome chromatinaccessibilityimpactstranscriptionalreprogramminginoocytes AT kumardinesh chromatinaccessibilityimpactstranscriptionalreprogramminginoocytes AT otanitomoki chromatinaccessibilityimpactstranscriptionalreprogramminginoocytes AT bradshawcharlesr chromatinaccessibilityimpactstranscriptionalreprogramminginoocytes AT liveseyfrederickj chromatinaccessibilityimpactstranscriptionalreprogramminginoocytes AT kellismanolis chromatinaccessibilityimpactstranscriptionalreprogramminginoocytes AT gurdonjohnb chromatinaccessibilityimpactstranscriptionalreprogramminginoocytes |