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Chromatin Accessibility Impacts Transcriptional Reprogramming in Oocytes

Oocytes have a remarkable ability to reactivate silenced genes in somatic cells. However, it is not clear how the chromatin architecture of somatic cells affects this transcriptional reprogramming. Here, we investigated the relationship between the chromatin opening and transcriptional activation. W...

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Autores principales: Miyamoto, Kei, Nguyen, Khoi T., Allen, George E., Jullien, Jerome, Kumar, Dinesh, Otani, Tomoki, Bradshaw, Charles R., Livesey, Frederick J., Kellis, Manolis, Gurdon, John B.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cell Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6057489/
https://www.ncbi.nlm.nih.gov/pubmed/29996092
http://dx.doi.org/10.1016/j.celrep.2018.06.030
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author Miyamoto, Kei
Nguyen, Khoi T.
Allen, George E.
Jullien, Jerome
Kumar, Dinesh
Otani, Tomoki
Bradshaw, Charles R.
Livesey, Frederick J.
Kellis, Manolis
Gurdon, John B.
author_facet Miyamoto, Kei
Nguyen, Khoi T.
Allen, George E.
Jullien, Jerome
Kumar, Dinesh
Otani, Tomoki
Bradshaw, Charles R.
Livesey, Frederick J.
Kellis, Manolis
Gurdon, John B.
author_sort Miyamoto, Kei
collection PubMed
description Oocytes have a remarkable ability to reactivate silenced genes in somatic cells. However, it is not clear how the chromatin architecture of somatic cells affects this transcriptional reprogramming. Here, we investigated the relationship between the chromatin opening and transcriptional activation. We reveal changes in chromatin accessibility and their relevance to transcriptional reprogramming after transplantation of somatic nuclei into Xenopus oocytes. Genes that are silenced, but have pre-existing open transcription start sites in donor cells, are prone to be activated after nuclear transfer, suggesting that the chromatin signature of somatic nuclei influences transcriptional reprogramming. There are also activated genes associated with new open chromatin sites, and transcription factors in oocytes play an important role in transcriptional reprogramming from such genes. Finally, we show that genes resistant to reprogramming are associated with closed chromatin configurations. We conclude that chromatin accessibility is a central factor for successful transcriptional reprogramming in oocytes.
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spelling pubmed-60574892018-07-25 Chromatin Accessibility Impacts Transcriptional Reprogramming in Oocytes Miyamoto, Kei Nguyen, Khoi T. Allen, George E. Jullien, Jerome Kumar, Dinesh Otani, Tomoki Bradshaw, Charles R. Livesey, Frederick J. Kellis, Manolis Gurdon, John B. Cell Rep Article Oocytes have a remarkable ability to reactivate silenced genes in somatic cells. However, it is not clear how the chromatin architecture of somatic cells affects this transcriptional reprogramming. Here, we investigated the relationship between the chromatin opening and transcriptional activation. We reveal changes in chromatin accessibility and their relevance to transcriptional reprogramming after transplantation of somatic nuclei into Xenopus oocytes. Genes that are silenced, but have pre-existing open transcription start sites in donor cells, are prone to be activated after nuclear transfer, suggesting that the chromatin signature of somatic nuclei influences transcriptional reprogramming. There are also activated genes associated with new open chromatin sites, and transcription factors in oocytes play an important role in transcriptional reprogramming from such genes. Finally, we show that genes resistant to reprogramming are associated with closed chromatin configurations. We conclude that chromatin accessibility is a central factor for successful transcriptional reprogramming in oocytes. Cell Press 2018-07-11 /pmc/articles/PMC6057489/ /pubmed/29996092 http://dx.doi.org/10.1016/j.celrep.2018.06.030 Text en © 2018 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Miyamoto, Kei
Nguyen, Khoi T.
Allen, George E.
Jullien, Jerome
Kumar, Dinesh
Otani, Tomoki
Bradshaw, Charles R.
Livesey, Frederick J.
Kellis, Manolis
Gurdon, John B.
Chromatin Accessibility Impacts Transcriptional Reprogramming in Oocytes
title Chromatin Accessibility Impacts Transcriptional Reprogramming in Oocytes
title_full Chromatin Accessibility Impacts Transcriptional Reprogramming in Oocytes
title_fullStr Chromatin Accessibility Impacts Transcriptional Reprogramming in Oocytes
title_full_unstemmed Chromatin Accessibility Impacts Transcriptional Reprogramming in Oocytes
title_short Chromatin Accessibility Impacts Transcriptional Reprogramming in Oocytes
title_sort chromatin accessibility impacts transcriptional reprogramming in oocytes
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6057489/
https://www.ncbi.nlm.nih.gov/pubmed/29996092
http://dx.doi.org/10.1016/j.celrep.2018.06.030
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