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Removal of slow-pulsing artifacts in in-phase (15)N relaxation dispersion experiments using broadband (1)H decoupling
Understanding of the molecular mechanisms of protein function requires detailed insight into the conformational landscape accessible to the protein. Conformational changes can be crucial for biological processes, such as ligand binding, protein folding, and catalysis. NMR spectroscopy is exquisitely...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Netherlands
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6061081/ https://www.ncbi.nlm.nih.gov/pubmed/29860650 http://dx.doi.org/10.1007/s10858-018-0193-2 |
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author | Chatterjee, Soumya Deep Ubbink, Marcellus van Ingen, Hugo |
author_facet | Chatterjee, Soumya Deep Ubbink, Marcellus van Ingen, Hugo |
author_sort | Chatterjee, Soumya Deep |
collection | PubMed |
description | Understanding of the molecular mechanisms of protein function requires detailed insight into the conformational landscape accessible to the protein. Conformational changes can be crucial for biological processes, such as ligand binding, protein folding, and catalysis. NMR spectroscopy is exquisitely sensitive to such dynamic changes in protein conformations. In particular, Carr–Purcell–Meiboom–Gill (CPMG) relaxation dispersion experiments are a powerful tool to investigate protein dynamics on a millisecond time scale. CPMG experiments that probe the chemical shift modulation of (15)N in-phase magnetization are particularly attractive, due to their high sensitivity. These experiments require high power (1)H decoupling during the CPMG period to keep the (15)N magnetization in-phase. Recently, an improved version of the in-phase (15)N-CPMG experiment was introduced, offering greater ease of use by employing a single (1)H decoupling power for all CPMG pulsing rates. In these experiments however, incomplete decoupling of off-resonance amide (1)H spins introduces an artefactual dispersion of relaxation rates, the so-called slow-pulsing artifact. Here, we analyze the slow-pulsing artifact in detail and demonstrate that it can be suppressed through the use of composite pulse decoupling (CPD). We report the performances of various CPD schemes and show that CPD decoupling based on the 90(x)–240(y)–90(x) element results in high-quality dispersion curves free of artifacts, even for amides with high (1)H offset. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s10858-018-0193-2) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-6061081 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Springer Netherlands |
record_format | MEDLINE/PubMed |
spelling | pubmed-60610812018-08-09 Removal of slow-pulsing artifacts in in-phase (15)N relaxation dispersion experiments using broadband (1)H decoupling Chatterjee, Soumya Deep Ubbink, Marcellus van Ingen, Hugo J Biomol NMR Article Understanding of the molecular mechanisms of protein function requires detailed insight into the conformational landscape accessible to the protein. Conformational changes can be crucial for biological processes, such as ligand binding, protein folding, and catalysis. NMR spectroscopy is exquisitely sensitive to such dynamic changes in protein conformations. In particular, Carr–Purcell–Meiboom–Gill (CPMG) relaxation dispersion experiments are a powerful tool to investigate protein dynamics on a millisecond time scale. CPMG experiments that probe the chemical shift modulation of (15)N in-phase magnetization are particularly attractive, due to their high sensitivity. These experiments require high power (1)H decoupling during the CPMG period to keep the (15)N magnetization in-phase. Recently, an improved version of the in-phase (15)N-CPMG experiment was introduced, offering greater ease of use by employing a single (1)H decoupling power for all CPMG pulsing rates. In these experiments however, incomplete decoupling of off-resonance amide (1)H spins introduces an artefactual dispersion of relaxation rates, the so-called slow-pulsing artifact. Here, we analyze the slow-pulsing artifact in detail and demonstrate that it can be suppressed through the use of composite pulse decoupling (CPD). We report the performances of various CPD schemes and show that CPD decoupling based on the 90(x)–240(y)–90(x) element results in high-quality dispersion curves free of artifacts, even for amides with high (1)H offset. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s10858-018-0193-2) contains supplementary material, which is available to authorized users. Springer Netherlands 2018-06-02 2018 /pmc/articles/PMC6061081/ /pubmed/29860650 http://dx.doi.org/10.1007/s10858-018-0193-2 Text en © The Author(s) 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. |
spellingShingle | Article Chatterjee, Soumya Deep Ubbink, Marcellus van Ingen, Hugo Removal of slow-pulsing artifacts in in-phase (15)N relaxation dispersion experiments using broadband (1)H decoupling |
title | Removal of slow-pulsing artifacts in in-phase (15)N relaxation dispersion experiments using broadband (1)H decoupling |
title_full | Removal of slow-pulsing artifacts in in-phase (15)N relaxation dispersion experiments using broadband (1)H decoupling |
title_fullStr | Removal of slow-pulsing artifacts in in-phase (15)N relaxation dispersion experiments using broadband (1)H decoupling |
title_full_unstemmed | Removal of slow-pulsing artifacts in in-phase (15)N relaxation dispersion experiments using broadband (1)H decoupling |
title_short | Removal of slow-pulsing artifacts in in-phase (15)N relaxation dispersion experiments using broadband (1)H decoupling |
title_sort | removal of slow-pulsing artifacts in in-phase (15)n relaxation dispersion experiments using broadband (1)h decoupling |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6061081/ https://www.ncbi.nlm.nih.gov/pubmed/29860650 http://dx.doi.org/10.1007/s10858-018-0193-2 |
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