NanoPack: visualizing and processing long-read sequencing data

SUMMARY: Here we describe NanoPack, a set of tools developed for visualization and processing of long-read sequencing data from Oxford Nanopore Technologies and Pacific Biosciences. AVAILABILITY AND IMPLEMENTATION: The NanoPack tools are written in Python3 and released under the GNU GPL3.0 License....

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Detalles Bibliográficos
Autores principales: De Coster, Wouter, D’Hert, Svenn, Schultz, Darrin T, Cruts, Marc, Van Broeckhoven, Christine
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6061794/
https://www.ncbi.nlm.nih.gov/pubmed/29547981
http://dx.doi.org/10.1093/bioinformatics/bty149
Descripción
Sumario:SUMMARY: Here we describe NanoPack, a set of tools developed for visualization and processing of long-read sequencing data from Oxford Nanopore Technologies and Pacific Biosciences. AVAILABILITY AND IMPLEMENTATION: The NanoPack tools are written in Python3 and released under the GNU GPL3.0 License. The source code can be found at https://github.com/wdecoster/nanopack, together with links to separate scripts and their documentation. The scripts are compatible with Linux, Mac OS and the MS Windows 10 subsystem for Linux and are available as a graphical user interface, a web service at http://nanoplot.bioinf.be and command line tools. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

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