Cargando…

Multivariate techniques enable a biochemical classification of children with autism spectrum disorder versus typically‐developing peers: A comparison and validation study

Autism spectrum disorder (ASD) is a developmental disorder which is currently only diagnosed through behavioral testing. Impaired folate‐dependent one carbon metabolism (FOCM) and transsulfuration (TS) pathways have been implicated in ASD, and recently a study involving multivariate analysis based u...

Descripción completa

Detalles Bibliográficos
Autores principales: Howsmon, Daniel P., Vargason, Troy, Rubin, Robert A., Delhey, Leanna, Tippett, Marie, Rose, Shannon, Bennuri, Sirish C., Slattery, John C., Melnyk, Stepan, James, S. Jill, Frye, Richard E., Hahn, Juergen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6063877/
https://www.ncbi.nlm.nih.gov/pubmed/30065970
http://dx.doi.org/10.1002/btm2.10095
_version_ 1783342612900478976
author Howsmon, Daniel P.
Vargason, Troy
Rubin, Robert A.
Delhey, Leanna
Tippett, Marie
Rose, Shannon
Bennuri, Sirish C.
Slattery, John C.
Melnyk, Stepan
James, S. Jill
Frye, Richard E.
Hahn, Juergen
author_facet Howsmon, Daniel P.
Vargason, Troy
Rubin, Robert A.
Delhey, Leanna
Tippett, Marie
Rose, Shannon
Bennuri, Sirish C.
Slattery, John C.
Melnyk, Stepan
James, S. Jill
Frye, Richard E.
Hahn, Juergen
author_sort Howsmon, Daniel P.
collection PubMed
description Autism spectrum disorder (ASD) is a developmental disorder which is currently only diagnosed through behavioral testing. Impaired folate‐dependent one carbon metabolism (FOCM) and transsulfuration (TS) pathways have been implicated in ASD, and recently a study involving multivariate analysis based upon Fisher Discriminant Analysis returned very promising results for predicting an ASD diagnosis. This article takes another step toward the goal of developing a biochemical diagnostic for ASD by comparing five classification algorithms on existing data of FOCM/TS metabolites, and also validating the classification results with new data from an ASD cohort. The comparison results indicate a high sensitivity and specificity for the original data set and up to a 88% correct classification of the ASD cohort at an expected 5% misclassification rate for typically‐developing controls. These results form the foundation for the development of a biochemical test for ASD which promises to aid diagnosis of ASD and provide biochemical understanding of the disease, applicable to at least a subset of the ASD population.
format Online
Article
Text
id pubmed-6063877
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-60638772018-07-31 Multivariate techniques enable a biochemical classification of children with autism spectrum disorder versus typically‐developing peers: A comparison and validation study Howsmon, Daniel P. Vargason, Troy Rubin, Robert A. Delhey, Leanna Tippett, Marie Rose, Shannon Bennuri, Sirish C. Slattery, John C. Melnyk, Stepan James, S. Jill Frye, Richard E. Hahn, Juergen Bioeng Transl Med Research Reports Autism spectrum disorder (ASD) is a developmental disorder which is currently only diagnosed through behavioral testing. Impaired folate‐dependent one carbon metabolism (FOCM) and transsulfuration (TS) pathways have been implicated in ASD, and recently a study involving multivariate analysis based upon Fisher Discriminant Analysis returned very promising results for predicting an ASD diagnosis. This article takes another step toward the goal of developing a biochemical diagnostic for ASD by comparing five classification algorithms on existing data of FOCM/TS metabolites, and also validating the classification results with new data from an ASD cohort. The comparison results indicate a high sensitivity and specificity for the original data set and up to a 88% correct classification of the ASD cohort at an expected 5% misclassification rate for typically‐developing controls. These results form the foundation for the development of a biochemical test for ASD which promises to aid diagnosis of ASD and provide biochemical understanding of the disease, applicable to at least a subset of the ASD population. John Wiley and Sons Inc. 2018-06-19 /pmc/articles/PMC6063877/ /pubmed/30065970 http://dx.doi.org/10.1002/btm2.10095 Text en © 2018 The Authors. Bioengineering & Translational Medicine is published by Wiley Periodicals, Inc. on behalf of The American Institute of Chemical Engineers This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Reports
Howsmon, Daniel P.
Vargason, Troy
Rubin, Robert A.
Delhey, Leanna
Tippett, Marie
Rose, Shannon
Bennuri, Sirish C.
Slattery, John C.
Melnyk, Stepan
James, S. Jill
Frye, Richard E.
Hahn, Juergen
Multivariate techniques enable a biochemical classification of children with autism spectrum disorder versus typically‐developing peers: A comparison and validation study
title Multivariate techniques enable a biochemical classification of children with autism spectrum disorder versus typically‐developing peers: A comparison and validation study
title_full Multivariate techniques enable a biochemical classification of children with autism spectrum disorder versus typically‐developing peers: A comparison and validation study
title_fullStr Multivariate techniques enable a biochemical classification of children with autism spectrum disorder versus typically‐developing peers: A comparison and validation study
title_full_unstemmed Multivariate techniques enable a biochemical classification of children with autism spectrum disorder versus typically‐developing peers: A comparison and validation study
title_short Multivariate techniques enable a biochemical classification of children with autism spectrum disorder versus typically‐developing peers: A comparison and validation study
title_sort multivariate techniques enable a biochemical classification of children with autism spectrum disorder versus typically‐developing peers: a comparison and validation study
topic Research Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6063877/
https://www.ncbi.nlm.nih.gov/pubmed/30065970
http://dx.doi.org/10.1002/btm2.10095
work_keys_str_mv AT howsmondanielp multivariatetechniquesenableabiochemicalclassificationofchildrenwithautismspectrumdisorderversustypicallydevelopingpeersacomparisonandvalidationstudy
AT vargasontroy multivariatetechniquesenableabiochemicalclassificationofchildrenwithautismspectrumdisorderversustypicallydevelopingpeersacomparisonandvalidationstudy
AT rubinroberta multivariatetechniquesenableabiochemicalclassificationofchildrenwithautismspectrumdisorderversustypicallydevelopingpeersacomparisonandvalidationstudy
AT delheyleanna multivariatetechniquesenableabiochemicalclassificationofchildrenwithautismspectrumdisorderversustypicallydevelopingpeersacomparisonandvalidationstudy
AT tippettmarie multivariatetechniquesenableabiochemicalclassificationofchildrenwithautismspectrumdisorderversustypicallydevelopingpeersacomparisonandvalidationstudy
AT roseshannon multivariatetechniquesenableabiochemicalclassificationofchildrenwithautismspectrumdisorderversustypicallydevelopingpeersacomparisonandvalidationstudy
AT bennurisirishc multivariatetechniquesenableabiochemicalclassificationofchildrenwithautismspectrumdisorderversustypicallydevelopingpeersacomparisonandvalidationstudy
AT slatteryjohnc multivariatetechniquesenableabiochemicalclassificationofchildrenwithautismspectrumdisorderversustypicallydevelopingpeersacomparisonandvalidationstudy
AT melnykstepan multivariatetechniquesenableabiochemicalclassificationofchildrenwithautismspectrumdisorderversustypicallydevelopingpeersacomparisonandvalidationstudy
AT jamessjill multivariatetechniquesenableabiochemicalclassificationofchildrenwithautismspectrumdisorderversustypicallydevelopingpeersacomparisonandvalidationstudy
AT fryericharde multivariatetechniquesenableabiochemicalclassificationofchildrenwithautismspectrumdisorderversustypicallydevelopingpeersacomparisonandvalidationstudy
AT hahnjuergen multivariatetechniquesenableabiochemicalclassificationofchildrenwithautismspectrumdisorderversustypicallydevelopingpeersacomparisonandvalidationstudy