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Finger Millet [Eleusine coracana (L.) Gaertn.] Improvement: Current Status and Future Interventions of Whole Genome Sequence

The whole genome sequence (WGS) of the much awaited, nutrient rich and climate resilient crop, finger millet (Eleusine coracana (L.) Gaertn.) has been released recently. While possessing superior mineral nutrients and excellent shelf life as compared to other major cereals, multiploidy nature of the...

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Autores principales: Antony Ceasar, S., Maharajan, T., Ajeesh Krishna, T. P., Ramakrishnan, M., Victor Roch, G., Satish, Lakkakula, Ignacimuthu, Savarimuthu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6064933/
https://www.ncbi.nlm.nih.gov/pubmed/30083176
http://dx.doi.org/10.3389/fpls.2018.01054
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author Antony Ceasar, S.
Maharajan, T.
Ajeesh Krishna, T. P.
Ramakrishnan, M.
Victor Roch, G.
Satish, Lakkakula
Ignacimuthu, Savarimuthu
author_facet Antony Ceasar, S.
Maharajan, T.
Ajeesh Krishna, T. P.
Ramakrishnan, M.
Victor Roch, G.
Satish, Lakkakula
Ignacimuthu, Savarimuthu
author_sort Antony Ceasar, S.
collection PubMed
description The whole genome sequence (WGS) of the much awaited, nutrient rich and climate resilient crop, finger millet (Eleusine coracana (L.) Gaertn.) has been released recently. While possessing superior mineral nutrients and excellent shelf life as compared to other major cereals, multiploidy nature of the genome and relatively small plantation acreage in less developed countries hampered the genome sequencing of finger millet, disposing it as one of the lastly sequenced genomes in cereals. The genomic information available for this crop is very little when compared to other major cereals like rice, maize and barley. As a result, only a limited number of genetic and genomic studies has been undertaken for the improvement of this crop. Finger millet is known especially for its superior calcium content, but the high-throughput studies are yet to be performed to understand the mechanisms behind calcium transport and grain filling. The WGS of finger millet is expected to help to understand this and other important molecular mechanisms in finger millet, which may be harnessed for the nutrient fortification of other cereals. In this review, we discuss various efforts made so far on the improvement of finger millet including genetic improvement, transcriptome analysis, mapping of quantitative trait loci (QTLs) for traits, etc. We also discuss the pitfalls of modern genetic studies and provide insights for accelerating the finger millet improvement with the interventions of WGS in near future. Advanced genetic and genomic studies aided by WGS may help to improve the finger millet, which will be helpful to strengthen the nutritional security in addition to food security in the developing countries of Asia and Africa.
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spelling pubmed-60649332018-08-06 Finger Millet [Eleusine coracana (L.) Gaertn.] Improvement: Current Status and Future Interventions of Whole Genome Sequence Antony Ceasar, S. Maharajan, T. Ajeesh Krishna, T. P. Ramakrishnan, M. Victor Roch, G. Satish, Lakkakula Ignacimuthu, Savarimuthu Front Plant Sci Plant Science The whole genome sequence (WGS) of the much awaited, nutrient rich and climate resilient crop, finger millet (Eleusine coracana (L.) Gaertn.) has been released recently. While possessing superior mineral nutrients and excellent shelf life as compared to other major cereals, multiploidy nature of the genome and relatively small plantation acreage in less developed countries hampered the genome sequencing of finger millet, disposing it as one of the lastly sequenced genomes in cereals. The genomic information available for this crop is very little when compared to other major cereals like rice, maize and barley. As a result, only a limited number of genetic and genomic studies has been undertaken for the improvement of this crop. Finger millet is known especially for its superior calcium content, but the high-throughput studies are yet to be performed to understand the mechanisms behind calcium transport and grain filling. The WGS of finger millet is expected to help to understand this and other important molecular mechanisms in finger millet, which may be harnessed for the nutrient fortification of other cereals. In this review, we discuss various efforts made so far on the improvement of finger millet including genetic improvement, transcriptome analysis, mapping of quantitative trait loci (QTLs) for traits, etc. We also discuss the pitfalls of modern genetic studies and provide insights for accelerating the finger millet improvement with the interventions of WGS in near future. Advanced genetic and genomic studies aided by WGS may help to improve the finger millet, which will be helpful to strengthen the nutritional security in addition to food security in the developing countries of Asia and Africa. Frontiers Media S.A. 2018-07-23 /pmc/articles/PMC6064933/ /pubmed/30083176 http://dx.doi.org/10.3389/fpls.2018.01054 Text en Copyright © 2018 Antony Ceasar, Maharajan, Ajeesh Krishna, Ramakrishnan, Victor Roch, Satish and Ignacimuthu. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Antony Ceasar, S.
Maharajan, T.
Ajeesh Krishna, T. P.
Ramakrishnan, M.
Victor Roch, G.
Satish, Lakkakula
Ignacimuthu, Savarimuthu
Finger Millet [Eleusine coracana (L.) Gaertn.] Improvement: Current Status and Future Interventions of Whole Genome Sequence
title Finger Millet [Eleusine coracana (L.) Gaertn.] Improvement: Current Status and Future Interventions of Whole Genome Sequence
title_full Finger Millet [Eleusine coracana (L.) Gaertn.] Improvement: Current Status and Future Interventions of Whole Genome Sequence
title_fullStr Finger Millet [Eleusine coracana (L.) Gaertn.] Improvement: Current Status and Future Interventions of Whole Genome Sequence
title_full_unstemmed Finger Millet [Eleusine coracana (L.) Gaertn.] Improvement: Current Status and Future Interventions of Whole Genome Sequence
title_short Finger Millet [Eleusine coracana (L.) Gaertn.] Improvement: Current Status and Future Interventions of Whole Genome Sequence
title_sort finger millet [eleusine coracana (l.) gaertn.] improvement: current status and future interventions of whole genome sequence
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6064933/
https://www.ncbi.nlm.nih.gov/pubmed/30083176
http://dx.doi.org/10.3389/fpls.2018.01054
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