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Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function

Nearly 100 loci have been identified for pulmonary function, almost exclusively in studies of European ancestry populations. We extend previous research by meta-analyzing genome-wide association studies of 1000 Genomes imputed variants in relation to pulmonary function in a multiethnic population of...

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Autores principales: Wyss, Annah B., Sofer, Tamar, Lee, Mi Kyeong, Terzikhan, Natalie, Nguyen, Jennifer N., Lahousse, Lies, Latourelle, Jeanne C., Smith, Albert Vernon, Bartz, Traci M., Feitosa, Mary F., Gao, Wei, Ahluwalia, Tarunveer S., Tang, Wenbo, Oldmeadow, Christopher, Duan, Qing, de Jong, Kim, Wojczynski, Mary K., Wang, Xin-Qun, Noordam, Raymond, Hartwig, Fernando Pires, Jackson, Victoria E., Wang, Tianyuan, Obeidat, Ma’en, Hobbs, Brian D., Huan, Tianxiao, Gui, Hongsheng, Parker, Margaret M., Hu, Donglei, Mogil, Lauren S., Kichaev, Gleb, Jin, Jianping, Graff, Mariaelisa, Harris, Tamara B., Kalhan, Ravi, Heckbert, Susan R., Paternoster, Lavinia, Burkart, Kristin M., Liu, Yongmei, Holliday, Elizabeth G., Wilson, James G., Vonk, Judith M., Sanders, Jason L., Barr, R. Graham, de Mutsert, Renée, Menezes, Ana Maria Baptista, Adams, Hieab H. H., van den Berge, Maarten, Joehanes, Roby, Levin, Albert M., Liberto, Jennifer, Launer, Lenore J., Morrison, Alanna C., Sitlani, Colleen M., Celedón, Juan C., Kritchevsky, Stephen B., Scott, Rodney J., Christensen, Kaare, Rotter, Jerome I., Bonten, Tobias N., Wehrmeister, Fernando César, Bossé, Yohan, Xiao, Shujie, Oh, Sam, Franceschini, Nora, Brody, Jennifer A., Kaplan, Robert C., Lohman, Kurt, McEvoy, Mark, Province, Michael A., Rosendaal, Frits R., Taylor, Kent D., Nickle, David C., Williams, L. Keoki, Burchard, Esteban G., Wheeler, Heather E., Sin, Don D., Gudnason, Vilmundur, North, Kari E., Fornage, Myriam, Psaty, Bruce M., Myers, Richard H., O’Connor, George, Hansen, Torben, Laurie, Cathy C., Cassano, Patricia A., Sung, Joohon, Kim, Woo Jin, Attia, John R., Lange, Leslie, Boezen, H. Marike, Thyagarajan, Bharat, Rich, Stephen S., Mook-Kanamori, Dennis O., Horta, Bernardo Lessa, Uitterlinden, André G., Im, Hae Kyung, Cho, Michael H., Brusselle, Guy G., Gharib, Sina A., Dupuis, Josée, Manichaikul, Ani, London, Stephanie J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6065313/
https://www.ncbi.nlm.nih.gov/pubmed/30061609
http://dx.doi.org/10.1038/s41467-018-05369-0
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author Wyss, Annah B.
Sofer, Tamar
Lee, Mi Kyeong
Terzikhan, Natalie
Nguyen, Jennifer N.
Lahousse, Lies
Latourelle, Jeanne C.
Smith, Albert Vernon
Bartz, Traci M.
Feitosa, Mary F.
Gao, Wei
Ahluwalia, Tarunveer S.
Tang, Wenbo
Oldmeadow, Christopher
Duan, Qing
de Jong, Kim
Wojczynski, Mary K.
Wang, Xin-Qun
Noordam, Raymond
Hartwig, Fernando Pires
Jackson, Victoria E.
Wang, Tianyuan
Obeidat, Ma’en
Hobbs, Brian D.
Huan, Tianxiao
Gui, Hongsheng
Parker, Margaret M.
Hu, Donglei
Mogil, Lauren S.
Kichaev, Gleb
Jin, Jianping
Graff, Mariaelisa
Harris, Tamara B.
Kalhan, Ravi
Heckbert, Susan R.
Paternoster, Lavinia
Burkart, Kristin M.
Liu, Yongmei
Holliday, Elizabeth G.
Wilson, James G.
Vonk, Judith M.
Sanders, Jason L.
Barr, R. Graham
de Mutsert, Renée
Menezes, Ana Maria Baptista
Adams, Hieab H. H.
van den Berge, Maarten
Joehanes, Roby
Levin, Albert M.
Liberto, Jennifer
Launer, Lenore J.
Morrison, Alanna C.
Sitlani, Colleen M.
Celedón, Juan C.
Kritchevsky, Stephen B.
Scott, Rodney J.
Christensen, Kaare
Rotter, Jerome I.
Bonten, Tobias N.
Wehrmeister, Fernando César
Bossé, Yohan
Xiao, Shujie
Oh, Sam
Franceschini, Nora
Brody, Jennifer A.
Kaplan, Robert C.
Lohman, Kurt
McEvoy, Mark
Province, Michael A.
Rosendaal, Frits R.
Taylor, Kent D.
Nickle, David C.
Williams, L. Keoki
Burchard, Esteban G.
Wheeler, Heather E.
Sin, Don D.
Gudnason, Vilmundur
North, Kari E.
Fornage, Myriam
Psaty, Bruce M.
Myers, Richard H.
O’Connor, George
Hansen, Torben
Laurie, Cathy C.
Cassano, Patricia A.
Sung, Joohon
Kim, Woo Jin
Attia, John R.
Lange, Leslie
Boezen, H. Marike
Thyagarajan, Bharat
Rich, Stephen S.
Mook-Kanamori, Dennis O.
Horta, Bernardo Lessa
Uitterlinden, André G.
Im, Hae Kyung
Cho, Michael H.
Brusselle, Guy G.
Gharib, Sina A.
Dupuis, Josée
Manichaikul, Ani
London, Stephanie J.
author_facet Wyss, Annah B.
Sofer, Tamar
Lee, Mi Kyeong
Terzikhan, Natalie
Nguyen, Jennifer N.
Lahousse, Lies
Latourelle, Jeanne C.
Smith, Albert Vernon
Bartz, Traci M.
Feitosa, Mary F.
Gao, Wei
Ahluwalia, Tarunveer S.
Tang, Wenbo
Oldmeadow, Christopher
Duan, Qing
de Jong, Kim
Wojczynski, Mary K.
Wang, Xin-Qun
Noordam, Raymond
Hartwig, Fernando Pires
Jackson, Victoria E.
Wang, Tianyuan
Obeidat, Ma’en
Hobbs, Brian D.
Huan, Tianxiao
Gui, Hongsheng
Parker, Margaret M.
Hu, Donglei
Mogil, Lauren S.
Kichaev, Gleb
Jin, Jianping
Graff, Mariaelisa
Harris, Tamara B.
Kalhan, Ravi
Heckbert, Susan R.
Paternoster, Lavinia
Burkart, Kristin M.
Liu, Yongmei
Holliday, Elizabeth G.
Wilson, James G.
Vonk, Judith M.
Sanders, Jason L.
Barr, R. Graham
de Mutsert, Renée
Menezes, Ana Maria Baptista
Adams, Hieab H. H.
van den Berge, Maarten
Joehanes, Roby
Levin, Albert M.
Liberto, Jennifer
Launer, Lenore J.
Morrison, Alanna C.
Sitlani, Colleen M.
Celedón, Juan C.
Kritchevsky, Stephen B.
Scott, Rodney J.
Christensen, Kaare
Rotter, Jerome I.
Bonten, Tobias N.
Wehrmeister, Fernando César
Bossé, Yohan
Xiao, Shujie
Oh, Sam
Franceschini, Nora
Brody, Jennifer A.
Kaplan, Robert C.
Lohman, Kurt
McEvoy, Mark
Province, Michael A.
Rosendaal, Frits R.
Taylor, Kent D.
Nickle, David C.
Williams, L. Keoki
Burchard, Esteban G.
Wheeler, Heather E.
Sin, Don D.
Gudnason, Vilmundur
North, Kari E.
Fornage, Myriam
Psaty, Bruce M.
Myers, Richard H.
O’Connor, George
Hansen, Torben
Laurie, Cathy C.
Cassano, Patricia A.
Sung, Joohon
Kim, Woo Jin
Attia, John R.
Lange, Leslie
Boezen, H. Marike
Thyagarajan, Bharat
Rich, Stephen S.
Mook-Kanamori, Dennis O.
Horta, Bernardo Lessa
Uitterlinden, André G.
Im, Hae Kyung
Cho, Michael H.
Brusselle, Guy G.
Gharib, Sina A.
Dupuis, Josée
Manichaikul, Ani
London, Stephanie J.
author_sort Wyss, Annah B.
collection PubMed
description Nearly 100 loci have been identified for pulmonary function, almost exclusively in studies of European ancestry populations. We extend previous research by meta-analyzing genome-wide association studies of 1000 Genomes imputed variants in relation to pulmonary function in a multiethnic population of 90,715 individuals of European (N = 60,552), African (N = 8429), Asian (N = 9959), and Hispanic/Latino (N = 11,775) ethnicities. We identify over 50 additional loci at genome-wide significance in ancestry-specific or multiethnic meta-analyses. Using recent fine-mapping methods incorporating functional annotation, gene expression, and differences in linkage disequilibrium between ethnicities, we further shed light on potential causal variants and genes at known and newly identified loci. Several of the novel genes encode proteins with predicted or established drug targets, including KCNK2 and CDK12. Our study highlights the utility of multiethnic and integrative genomics approaches to extend existing knowledge of the genetics of lung function and clinical relevance of implicated loci.
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spelling pubmed-60653132018-07-31 Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function Wyss, Annah B. Sofer, Tamar Lee, Mi Kyeong Terzikhan, Natalie Nguyen, Jennifer N. Lahousse, Lies Latourelle, Jeanne C. Smith, Albert Vernon Bartz, Traci M. Feitosa, Mary F. Gao, Wei Ahluwalia, Tarunveer S. Tang, Wenbo Oldmeadow, Christopher Duan, Qing de Jong, Kim Wojczynski, Mary K. Wang, Xin-Qun Noordam, Raymond Hartwig, Fernando Pires Jackson, Victoria E. Wang, Tianyuan Obeidat, Ma’en Hobbs, Brian D. Huan, Tianxiao Gui, Hongsheng Parker, Margaret M. Hu, Donglei Mogil, Lauren S. Kichaev, Gleb Jin, Jianping Graff, Mariaelisa Harris, Tamara B. Kalhan, Ravi Heckbert, Susan R. Paternoster, Lavinia Burkart, Kristin M. Liu, Yongmei Holliday, Elizabeth G. Wilson, James G. Vonk, Judith M. Sanders, Jason L. Barr, R. Graham de Mutsert, Renée Menezes, Ana Maria Baptista Adams, Hieab H. H. van den Berge, Maarten Joehanes, Roby Levin, Albert M. Liberto, Jennifer Launer, Lenore J. Morrison, Alanna C. Sitlani, Colleen M. Celedón, Juan C. Kritchevsky, Stephen B. Scott, Rodney J. Christensen, Kaare Rotter, Jerome I. Bonten, Tobias N. Wehrmeister, Fernando César Bossé, Yohan Xiao, Shujie Oh, Sam Franceschini, Nora Brody, Jennifer A. Kaplan, Robert C. Lohman, Kurt McEvoy, Mark Province, Michael A. Rosendaal, Frits R. Taylor, Kent D. Nickle, David C. Williams, L. Keoki Burchard, Esteban G. Wheeler, Heather E. Sin, Don D. Gudnason, Vilmundur North, Kari E. Fornage, Myriam Psaty, Bruce M. Myers, Richard H. O’Connor, George Hansen, Torben Laurie, Cathy C. Cassano, Patricia A. Sung, Joohon Kim, Woo Jin Attia, John R. Lange, Leslie Boezen, H. Marike Thyagarajan, Bharat Rich, Stephen S. Mook-Kanamori, Dennis O. Horta, Bernardo Lessa Uitterlinden, André G. Im, Hae Kyung Cho, Michael H. Brusselle, Guy G. Gharib, Sina A. Dupuis, Josée Manichaikul, Ani London, Stephanie J. Nat Commun Article Nearly 100 loci have been identified for pulmonary function, almost exclusively in studies of European ancestry populations. We extend previous research by meta-analyzing genome-wide association studies of 1000 Genomes imputed variants in relation to pulmonary function in a multiethnic population of 90,715 individuals of European (N = 60,552), African (N = 8429), Asian (N = 9959), and Hispanic/Latino (N = 11,775) ethnicities. We identify over 50 additional loci at genome-wide significance in ancestry-specific or multiethnic meta-analyses. Using recent fine-mapping methods incorporating functional annotation, gene expression, and differences in linkage disequilibrium between ethnicities, we further shed light on potential causal variants and genes at known and newly identified loci. Several of the novel genes encode proteins with predicted or established drug targets, including KCNK2 and CDK12. Our study highlights the utility of multiethnic and integrative genomics approaches to extend existing knowledge of the genetics of lung function and clinical relevance of implicated loci. Nature Publishing Group UK 2018-07-30 /pmc/articles/PMC6065313/ /pubmed/30061609 http://dx.doi.org/10.1038/s41467-018-05369-0 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Wyss, Annah B.
Sofer, Tamar
Lee, Mi Kyeong
Terzikhan, Natalie
Nguyen, Jennifer N.
Lahousse, Lies
Latourelle, Jeanne C.
Smith, Albert Vernon
Bartz, Traci M.
Feitosa, Mary F.
Gao, Wei
Ahluwalia, Tarunveer S.
Tang, Wenbo
Oldmeadow, Christopher
Duan, Qing
de Jong, Kim
Wojczynski, Mary K.
Wang, Xin-Qun
Noordam, Raymond
Hartwig, Fernando Pires
Jackson, Victoria E.
Wang, Tianyuan
Obeidat, Ma’en
Hobbs, Brian D.
Huan, Tianxiao
Gui, Hongsheng
Parker, Margaret M.
Hu, Donglei
Mogil, Lauren S.
Kichaev, Gleb
Jin, Jianping
Graff, Mariaelisa
Harris, Tamara B.
Kalhan, Ravi
Heckbert, Susan R.
Paternoster, Lavinia
Burkart, Kristin M.
Liu, Yongmei
Holliday, Elizabeth G.
Wilson, James G.
Vonk, Judith M.
Sanders, Jason L.
Barr, R. Graham
de Mutsert, Renée
Menezes, Ana Maria Baptista
Adams, Hieab H. H.
van den Berge, Maarten
Joehanes, Roby
Levin, Albert M.
Liberto, Jennifer
Launer, Lenore J.
Morrison, Alanna C.
Sitlani, Colleen M.
Celedón, Juan C.
Kritchevsky, Stephen B.
Scott, Rodney J.
Christensen, Kaare
Rotter, Jerome I.
Bonten, Tobias N.
Wehrmeister, Fernando César
Bossé, Yohan
Xiao, Shujie
Oh, Sam
Franceschini, Nora
Brody, Jennifer A.
Kaplan, Robert C.
Lohman, Kurt
McEvoy, Mark
Province, Michael A.
Rosendaal, Frits R.
Taylor, Kent D.
Nickle, David C.
Williams, L. Keoki
Burchard, Esteban G.
Wheeler, Heather E.
Sin, Don D.
Gudnason, Vilmundur
North, Kari E.
Fornage, Myriam
Psaty, Bruce M.
Myers, Richard H.
O’Connor, George
Hansen, Torben
Laurie, Cathy C.
Cassano, Patricia A.
Sung, Joohon
Kim, Woo Jin
Attia, John R.
Lange, Leslie
Boezen, H. Marike
Thyagarajan, Bharat
Rich, Stephen S.
Mook-Kanamori, Dennis O.
Horta, Bernardo Lessa
Uitterlinden, André G.
Im, Hae Kyung
Cho, Michael H.
Brusselle, Guy G.
Gharib, Sina A.
Dupuis, Josée
Manichaikul, Ani
London, Stephanie J.
Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function
title Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function
title_full Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function
title_fullStr Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function
title_full_unstemmed Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function
title_short Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function
title_sort multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6065313/
https://www.ncbi.nlm.nih.gov/pubmed/30061609
http://dx.doi.org/10.1038/s41467-018-05369-0
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