Cargando…
First-principles and Molecular Dynamics simulation studies of functionalization of Au(32) golden fullerene with amino acids
With the growing potential applications of nanoparticles in biomedicine especially the increasing concerns of nanotoxicity of gold nanoparticles, the interaction between protein and nanoparticles is proving to be of fundamental interest for bio-functionalization of materials. The interaction of glyc...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2018
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6065410/ https://www.ncbi.nlm.nih.gov/pubmed/30061669 http://dx.doi.org/10.1038/s41598-018-29887-5 |
_version_ | 1783342862395506688 |
---|---|
author | Darvish Ganji, M. Tavassoli Larijani, H. Alamol-hoda, R. Mehdizadeh, M. |
author_facet | Darvish Ganji, M. Tavassoli Larijani, H. Alamol-hoda, R. Mehdizadeh, M. |
author_sort | Darvish Ganji, M. |
collection | PubMed |
description | With the growing potential applications of nanoparticles in biomedicine especially the increasing concerns of nanotoxicity of gold nanoparticles, the interaction between protein and nanoparticles is proving to be of fundamental interest for bio-functionalization of materials. The interaction of glycine (Gly) amino acid with Au(32) fullerene was first investigated with B3LYP-D3/TZVP model. Several forms of glycine were selected to better understand the trends in binding nature of glycine interacting with the nanocage. We have evaluated various stable configurations of the Gly/Au(32) complexes and the calculated adsorption energies and AIM analysis indicate that non-Gly, z-Gly and also tripeptide glycine can form stable bindings with Au(32) at aqueous solution via their amino nitrogen (N) and/or carbonyl/carboxyl oxygen (O) active sites. Furthermore, cysteine, tyrosine, histidine and phenylalanine amino acids bound also strongly to the Au(32) nanocage. Electronic structures and quantum molecular descriptors calculations also demonstrate the significant changes in the electronic properties of the nanocage due to the attachment of selected amino acids. DFT based MD simulation for the most stable complex demonstrate that Gly/Au(32) complex is quite stable at ambient condition. Our first-principles findings offer fundamental insights into the functionalization of Au(32) nanocage and envisage its applicability as novel carrier of the drugs. |
format | Online Article Text |
id | pubmed-6065410 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-60654102018-08-06 First-principles and Molecular Dynamics simulation studies of functionalization of Au(32) golden fullerene with amino acids Darvish Ganji, M. Tavassoli Larijani, H. Alamol-hoda, R. Mehdizadeh, M. Sci Rep Article With the growing potential applications of nanoparticles in biomedicine especially the increasing concerns of nanotoxicity of gold nanoparticles, the interaction between protein and nanoparticles is proving to be of fundamental interest for bio-functionalization of materials. The interaction of glycine (Gly) amino acid with Au(32) fullerene was first investigated with B3LYP-D3/TZVP model. Several forms of glycine were selected to better understand the trends in binding nature of glycine interacting with the nanocage. We have evaluated various stable configurations of the Gly/Au(32) complexes and the calculated adsorption energies and AIM analysis indicate that non-Gly, z-Gly and also tripeptide glycine can form stable bindings with Au(32) at aqueous solution via their amino nitrogen (N) and/or carbonyl/carboxyl oxygen (O) active sites. Furthermore, cysteine, tyrosine, histidine and phenylalanine amino acids bound also strongly to the Au(32) nanocage. Electronic structures and quantum molecular descriptors calculations also demonstrate the significant changes in the electronic properties of the nanocage due to the attachment of selected amino acids. DFT based MD simulation for the most stable complex demonstrate that Gly/Au(32) complex is quite stable at ambient condition. Our first-principles findings offer fundamental insights into the functionalization of Au(32) nanocage and envisage its applicability as novel carrier of the drugs. Nature Publishing Group UK 2018-07-30 /pmc/articles/PMC6065410/ /pubmed/30061669 http://dx.doi.org/10.1038/s41598-018-29887-5 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Darvish Ganji, M. Tavassoli Larijani, H. Alamol-hoda, R. Mehdizadeh, M. First-principles and Molecular Dynamics simulation studies of functionalization of Au(32) golden fullerene with amino acids |
title | First-principles and Molecular Dynamics simulation studies of functionalization of Au(32) golden fullerene with amino acids |
title_full | First-principles and Molecular Dynamics simulation studies of functionalization of Au(32) golden fullerene with amino acids |
title_fullStr | First-principles and Molecular Dynamics simulation studies of functionalization of Au(32) golden fullerene with amino acids |
title_full_unstemmed | First-principles and Molecular Dynamics simulation studies of functionalization of Au(32) golden fullerene with amino acids |
title_short | First-principles and Molecular Dynamics simulation studies of functionalization of Au(32) golden fullerene with amino acids |
title_sort | first-principles and molecular dynamics simulation studies of functionalization of au(32) golden fullerene with amino acids |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6065410/ https://www.ncbi.nlm.nih.gov/pubmed/30061669 http://dx.doi.org/10.1038/s41598-018-29887-5 |
work_keys_str_mv | AT darvishganjim firstprinciplesandmoleculardynamicssimulationstudiesoffunctionalizationofau32goldenfullerenewithaminoacids AT tavassolilarijanih firstprinciplesandmoleculardynamicssimulationstudiesoffunctionalizationofau32goldenfullerenewithaminoacids AT alamolhodar firstprinciplesandmoleculardynamicssimulationstudiesoffunctionalizationofau32goldenfullerenewithaminoacids AT mehdizadehm firstprinciplesandmoleculardynamicssimulationstudiesoffunctionalizationofau32goldenfullerenewithaminoacids |