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hsa_circ_0000729, a potential prognostic biomarker in lung adenocarcinoma
BACKGROUND: Increasing evidence has demonstrated that circular RNAs (circRNAs) may play an important role in oncogenesis and tumor development; however, their role in lung adenocarcinoma (LUAD) remains unclear. We identified the differentially expressed circRNAs in LUAD and investigated the potentia...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley & Sons Australia, Ltd
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6068440/ https://www.ncbi.nlm.nih.gov/pubmed/29932500 http://dx.doi.org/10.1111/1759-7714.12761 |
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author | Li, Shicheng Sun, Xiao Miao, Shuncheng Lu, Tong Wang, Yuanyong Liu, Jia Jiao, Wenjie |
author_facet | Li, Shicheng Sun, Xiao Miao, Shuncheng Lu, Tong Wang, Yuanyong Liu, Jia Jiao, Wenjie |
author_sort | Li, Shicheng |
collection | PubMed |
description | BACKGROUND: Increasing evidence has demonstrated that circular RNAs (circRNAs) may play an important role in oncogenesis and tumor development; however, their role in lung adenocarcinoma (LUAD) remains unclear. We identified the differentially expressed circRNAs in LUAD and investigated the potential mechanisms for cancer progression. METHODS: We examined differentially expressed circRNAs in LUAD and paired normal tissues using downloaded circRNA microarrays from the Gene Expression Omnibus. We constructed gene co‐expression networks based on the degree of Pearson correlation to predict the critical circRNA in LUAD. Gene Ontology analysis was performed on the genes in the network. We observed one novel circRNA upregulated in LUAD, hsa_circ_0000792, as well as its potential sponged microRNA, miR‐375. Subsequent real‐time quantitative PCR was used to verify the bioinformatics analysis. RESULTS: Several circRNAs showed significantly different expression levels in LUAD tissues. Real‐time quantitative PCR and further co‐expression network analysis of 42 matched tissue samples showed a significant difference in expression between LUAD and normal tissues in hsa_circ_0000792 (P < 0.001). We built a network of hsa_circ_0000792‐targeted miRNA gene interactions, including miR‐375 and the corresponding messenger RNAs. Gene Ontology analysis revealed that hsa_circ_0000792 could participate in signal transduction and cell communication during LUAD development. Larger area under the curve by receiver operating characteristic curve analysis of hsa_circ_0000792 and miR‐375 (0.815 and 0.772, respectively) in LUAD indicated greater potential as biomarkers. CONCLUSIONS: We identified hsa_circ_0000792 as a potential LUAD biomarker; however, further studies are required to determine the mechanism of this circRNA in LUAD development. |
format | Online Article Text |
id | pubmed-6068440 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | John Wiley & Sons Australia, Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-60684402018-08-03 hsa_circ_0000729, a potential prognostic biomarker in lung adenocarcinoma Li, Shicheng Sun, Xiao Miao, Shuncheng Lu, Tong Wang, Yuanyong Liu, Jia Jiao, Wenjie Thorac Cancer Original Articles BACKGROUND: Increasing evidence has demonstrated that circular RNAs (circRNAs) may play an important role in oncogenesis and tumor development; however, their role in lung adenocarcinoma (LUAD) remains unclear. We identified the differentially expressed circRNAs in LUAD and investigated the potential mechanisms for cancer progression. METHODS: We examined differentially expressed circRNAs in LUAD and paired normal tissues using downloaded circRNA microarrays from the Gene Expression Omnibus. We constructed gene co‐expression networks based on the degree of Pearson correlation to predict the critical circRNA in LUAD. Gene Ontology analysis was performed on the genes in the network. We observed one novel circRNA upregulated in LUAD, hsa_circ_0000792, as well as its potential sponged microRNA, miR‐375. Subsequent real‐time quantitative PCR was used to verify the bioinformatics analysis. RESULTS: Several circRNAs showed significantly different expression levels in LUAD tissues. Real‐time quantitative PCR and further co‐expression network analysis of 42 matched tissue samples showed a significant difference in expression between LUAD and normal tissues in hsa_circ_0000792 (P < 0.001). We built a network of hsa_circ_0000792‐targeted miRNA gene interactions, including miR‐375 and the corresponding messenger RNAs. Gene Ontology analysis revealed that hsa_circ_0000792 could participate in signal transduction and cell communication during LUAD development. Larger area under the curve by receiver operating characteristic curve analysis of hsa_circ_0000792 and miR‐375 (0.815 and 0.772, respectively) in LUAD indicated greater potential as biomarkers. CONCLUSIONS: We identified hsa_circ_0000792 as a potential LUAD biomarker; however, further studies are required to determine the mechanism of this circRNA in LUAD development. John Wiley & Sons Australia, Ltd 2018-06-22 2018-08 /pmc/articles/PMC6068440/ /pubmed/29932500 http://dx.doi.org/10.1111/1759-7714.12761 Text en © 2018 The Authors. Thoracic Cancer published by China Lung Oncology Group and John Wiley & Sons Australia, Ltd This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes. |
spellingShingle | Original Articles Li, Shicheng Sun, Xiao Miao, Shuncheng Lu, Tong Wang, Yuanyong Liu, Jia Jiao, Wenjie hsa_circ_0000729, a potential prognostic biomarker in lung adenocarcinoma |
title | hsa_circ_0000729, a potential prognostic biomarker in lung adenocarcinoma |
title_full | hsa_circ_0000729, a potential prognostic biomarker in lung adenocarcinoma |
title_fullStr | hsa_circ_0000729, a potential prognostic biomarker in lung adenocarcinoma |
title_full_unstemmed | hsa_circ_0000729, a potential prognostic biomarker in lung adenocarcinoma |
title_short | hsa_circ_0000729, a potential prognostic biomarker in lung adenocarcinoma |
title_sort | hsa_circ_0000729, a potential prognostic biomarker in lung adenocarcinoma |
topic | Original Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6068440/ https://www.ncbi.nlm.nih.gov/pubmed/29932500 http://dx.doi.org/10.1111/1759-7714.12761 |
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