Cargando…

hsa_circ_0000729, a potential prognostic biomarker in lung adenocarcinoma

BACKGROUND: Increasing evidence has demonstrated that circular RNAs (circRNAs) may play an important role in oncogenesis and tumor development; however, their role in lung adenocarcinoma (LUAD) remains unclear. We identified the differentially expressed circRNAs in LUAD and investigated the potentia...

Descripción completa

Detalles Bibliográficos
Autores principales: Li, Shicheng, Sun, Xiao, Miao, Shuncheng, Lu, Tong, Wang, Yuanyong, Liu, Jia, Jiao, Wenjie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley & Sons Australia, Ltd 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6068440/
https://www.ncbi.nlm.nih.gov/pubmed/29932500
http://dx.doi.org/10.1111/1759-7714.12761
_version_ 1783343270151061504
author Li, Shicheng
Sun, Xiao
Miao, Shuncheng
Lu, Tong
Wang, Yuanyong
Liu, Jia
Jiao, Wenjie
author_facet Li, Shicheng
Sun, Xiao
Miao, Shuncheng
Lu, Tong
Wang, Yuanyong
Liu, Jia
Jiao, Wenjie
author_sort Li, Shicheng
collection PubMed
description BACKGROUND: Increasing evidence has demonstrated that circular RNAs (circRNAs) may play an important role in oncogenesis and tumor development; however, their role in lung adenocarcinoma (LUAD) remains unclear. We identified the differentially expressed circRNAs in LUAD and investigated the potential mechanisms for cancer progression. METHODS: We examined differentially expressed circRNAs in LUAD and paired normal tissues using downloaded circRNA microarrays from the Gene Expression Omnibus. We constructed gene co‐expression networks based on the degree of Pearson correlation to predict the critical circRNA in LUAD. Gene Ontology analysis was performed on the genes in the network. We observed one novel circRNA upregulated in LUAD, hsa_circ_0000792, as well as its potential sponged microRNA, miR‐375. Subsequent real‐time quantitative PCR was used to verify the bioinformatics analysis. RESULTS: Several circRNAs showed significantly different expression levels in LUAD tissues. Real‐time quantitative PCR and further co‐expression network analysis of 42 matched tissue samples showed a significant difference in expression between LUAD and normal tissues in hsa_circ_0000792 (P < 0.001). We built a network of hsa_circ_0000792‐targeted miRNA gene interactions, including miR‐375 and the corresponding messenger RNAs. Gene Ontology analysis revealed that hsa_circ_0000792 could participate in signal transduction and cell communication during LUAD development. Larger area under the curve by receiver operating characteristic curve analysis of hsa_circ_0000792 and miR‐375 (0.815 and 0.772, respectively) in LUAD indicated greater potential as biomarkers. CONCLUSIONS: We identified hsa_circ_0000792 as a potential LUAD biomarker; however, further studies are required to determine the mechanism of this circRNA in LUAD development.
format Online
Article
Text
id pubmed-6068440
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher John Wiley & Sons Australia, Ltd
record_format MEDLINE/PubMed
spelling pubmed-60684402018-08-03 hsa_circ_0000729, a potential prognostic biomarker in lung adenocarcinoma Li, Shicheng Sun, Xiao Miao, Shuncheng Lu, Tong Wang, Yuanyong Liu, Jia Jiao, Wenjie Thorac Cancer Original Articles BACKGROUND: Increasing evidence has demonstrated that circular RNAs (circRNAs) may play an important role in oncogenesis and tumor development; however, their role in lung adenocarcinoma (LUAD) remains unclear. We identified the differentially expressed circRNAs in LUAD and investigated the potential mechanisms for cancer progression. METHODS: We examined differentially expressed circRNAs in LUAD and paired normal tissues using downloaded circRNA microarrays from the Gene Expression Omnibus. We constructed gene co‐expression networks based on the degree of Pearson correlation to predict the critical circRNA in LUAD. Gene Ontology analysis was performed on the genes in the network. We observed one novel circRNA upregulated in LUAD, hsa_circ_0000792, as well as its potential sponged microRNA, miR‐375. Subsequent real‐time quantitative PCR was used to verify the bioinformatics analysis. RESULTS: Several circRNAs showed significantly different expression levels in LUAD tissues. Real‐time quantitative PCR and further co‐expression network analysis of 42 matched tissue samples showed a significant difference in expression between LUAD and normal tissues in hsa_circ_0000792 (P < 0.001). We built a network of hsa_circ_0000792‐targeted miRNA gene interactions, including miR‐375 and the corresponding messenger RNAs. Gene Ontology analysis revealed that hsa_circ_0000792 could participate in signal transduction and cell communication during LUAD development. Larger area under the curve by receiver operating characteristic curve analysis of hsa_circ_0000792 and miR‐375 (0.815 and 0.772, respectively) in LUAD indicated greater potential as biomarkers. CONCLUSIONS: We identified hsa_circ_0000792 as a potential LUAD biomarker; however, further studies are required to determine the mechanism of this circRNA in LUAD development. John Wiley & Sons Australia, Ltd 2018-06-22 2018-08 /pmc/articles/PMC6068440/ /pubmed/29932500 http://dx.doi.org/10.1111/1759-7714.12761 Text en © 2018 The Authors. Thoracic Cancer published by China Lung Oncology Group and John Wiley & Sons Australia, Ltd This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Original Articles
Li, Shicheng
Sun, Xiao
Miao, Shuncheng
Lu, Tong
Wang, Yuanyong
Liu, Jia
Jiao, Wenjie
hsa_circ_0000729, a potential prognostic biomarker in lung adenocarcinoma
title hsa_circ_0000729, a potential prognostic biomarker in lung adenocarcinoma
title_full hsa_circ_0000729, a potential prognostic biomarker in lung adenocarcinoma
title_fullStr hsa_circ_0000729, a potential prognostic biomarker in lung adenocarcinoma
title_full_unstemmed hsa_circ_0000729, a potential prognostic biomarker in lung adenocarcinoma
title_short hsa_circ_0000729, a potential prognostic biomarker in lung adenocarcinoma
title_sort hsa_circ_0000729, a potential prognostic biomarker in lung adenocarcinoma
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6068440/
https://www.ncbi.nlm.nih.gov/pubmed/29932500
http://dx.doi.org/10.1111/1759-7714.12761
work_keys_str_mv AT lishicheng hsacirc0000729apotentialprognosticbiomarkerinlungadenocarcinoma
AT sunxiao hsacirc0000729apotentialprognosticbiomarkerinlungadenocarcinoma
AT miaoshuncheng hsacirc0000729apotentialprognosticbiomarkerinlungadenocarcinoma
AT lutong hsacirc0000729apotentialprognosticbiomarkerinlungadenocarcinoma
AT wangyuanyong hsacirc0000729apotentialprognosticbiomarkerinlungadenocarcinoma
AT liujia hsacirc0000729apotentialprognosticbiomarkerinlungadenocarcinoma
AT jiaowenjie hsacirc0000729apotentialprognosticbiomarkerinlungadenocarcinoma