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Using principal component analysis to reduce complex datasets produced by robotic technology in healthy participants
BACKGROUND: The KINARM robot produces a granular dataset of participant performance metrics associated with proprioceptive, motor, visuospatial, and executive function. This comprehensive battery includes several behavioral tasks that each generate 9 to 20 metrics of performance. Therefore, the enti...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6069537/ https://www.ncbi.nlm.nih.gov/pubmed/30064448 http://dx.doi.org/10.1186/s12984-018-0416-5 |
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author | Wood, Michael D. Simmatis, Leif E. R. Gordon Boyd, J. Scott, Stephen H. Jacobson, Jill A. |
author_facet | Wood, Michael D. Simmatis, Leif E. R. Gordon Boyd, J. Scott, Stephen H. Jacobson, Jill A. |
author_sort | Wood, Michael D. |
collection | PubMed |
description | BACKGROUND: The KINARM robot produces a granular dataset of participant performance metrics associated with proprioceptive, motor, visuospatial, and executive function. This comprehensive battery includes several behavioral tasks that each generate 9 to 20 metrics of performance. Therefore, the entire battery of tasks generates well over 100 metrics per participant, which can make clinical interpretation challenging. Therefore, we sought to reduce these multivariate data by applying principal component analysis (PCA) to increase interpretability while minimizing information loss. METHODS: Healthy right-hand dominant participants were assessed using a bilateral KINARM end-point robot. Subjects (Ns = 101–208) were assessed using 6 behavioral tasks and automated software generated 9 to 20 metrics related to the spatial and temporal aspects of subject performance. Data from these metrics were converted to Z-scores prior to PCA. The number of components was determined from scree plots and parallel analysis, with interpretability considered as a qualitative criterion. Rotation type (orthogonal vs oblique) was decided on a per task basis. RESULTS: The KINARM performance data, per task, was substantially reduced (range 67–79%), while still accounting for a large amount of variance (range 70–82%). The number of KINARM parameters reduced to 3 components for 5 out of 6 tasks and to 5 components for the sixth task. Many components were comprised of KINARM parameters with high loadings and only some cross loadings were observed, which demonstrates a strong separation of components. CONCLUSIONS: Complex participant data produced by the KINARM robot can be reduced into a small number of interpretable components by using PCA. Future applications of PCA may offer potential insight into specific patterns of sensorimotor impairment among patient populations. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12984-018-0416-5) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-6069537 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-60695372018-08-03 Using principal component analysis to reduce complex datasets produced by robotic technology in healthy participants Wood, Michael D. Simmatis, Leif E. R. Gordon Boyd, J. Scott, Stephen H. Jacobson, Jill A. J Neuroeng Rehabil Methodology BACKGROUND: The KINARM robot produces a granular dataset of participant performance metrics associated with proprioceptive, motor, visuospatial, and executive function. This comprehensive battery includes several behavioral tasks that each generate 9 to 20 metrics of performance. Therefore, the entire battery of tasks generates well over 100 metrics per participant, which can make clinical interpretation challenging. Therefore, we sought to reduce these multivariate data by applying principal component analysis (PCA) to increase interpretability while minimizing information loss. METHODS: Healthy right-hand dominant participants were assessed using a bilateral KINARM end-point robot. Subjects (Ns = 101–208) were assessed using 6 behavioral tasks and automated software generated 9 to 20 metrics related to the spatial and temporal aspects of subject performance. Data from these metrics were converted to Z-scores prior to PCA. The number of components was determined from scree plots and parallel analysis, with interpretability considered as a qualitative criterion. Rotation type (orthogonal vs oblique) was decided on a per task basis. RESULTS: The KINARM performance data, per task, was substantially reduced (range 67–79%), while still accounting for a large amount of variance (range 70–82%). The number of KINARM parameters reduced to 3 components for 5 out of 6 tasks and to 5 components for the sixth task. Many components were comprised of KINARM parameters with high loadings and only some cross loadings were observed, which demonstrates a strong separation of components. CONCLUSIONS: Complex participant data produced by the KINARM robot can be reduced into a small number of interpretable components by using PCA. Future applications of PCA may offer potential insight into specific patterns of sensorimotor impairment among patient populations. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12984-018-0416-5) contains supplementary material, which is available to authorized users. BioMed Central 2018-07-31 /pmc/articles/PMC6069537/ /pubmed/30064448 http://dx.doi.org/10.1186/s12984-018-0416-5 Text en © The Author(s). 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Methodology Wood, Michael D. Simmatis, Leif E. R. Gordon Boyd, J. Scott, Stephen H. Jacobson, Jill A. Using principal component analysis to reduce complex datasets produced by robotic technology in healthy participants |
title | Using principal component analysis to reduce complex datasets produced by robotic technology in healthy participants |
title_full | Using principal component analysis to reduce complex datasets produced by robotic technology in healthy participants |
title_fullStr | Using principal component analysis to reduce complex datasets produced by robotic technology in healthy participants |
title_full_unstemmed | Using principal component analysis to reduce complex datasets produced by robotic technology in healthy participants |
title_short | Using principal component analysis to reduce complex datasets produced by robotic technology in healthy participants |
title_sort | using principal component analysis to reduce complex datasets produced by robotic technology in healthy participants |
topic | Methodology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6069537/ https://www.ncbi.nlm.nih.gov/pubmed/30064448 http://dx.doi.org/10.1186/s12984-018-0416-5 |
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