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Laboratory growth of denitrifying water column microbial consortia from deep-sea shipwrecks in the northern Gulf of Mexico

Background: Shipwrecks serve as a rich source for novel microbial populations that have largely remained undiscovered. Low temperatures, lack of sunlight, and the availability of substrates derived from the shipwreck’s hull and cargo may provide an environment in which microbes can develop unique me...

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Autores principales: Haridas, Dhanya, Biffinger, Justin C., Boyd, Thomas J., Fulmer, Preston A., Hamdan, Leila J., Fitzgerald, Lisa A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000 Research Limited 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6069730/
https://www.ncbi.nlm.nih.gov/pubmed/30109018
http://dx.doi.org/10.12688/f1000research.12713.3
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author Haridas, Dhanya
Biffinger, Justin C.
Boyd, Thomas J.
Fulmer, Preston A.
Hamdan, Leila J.
Fitzgerald, Lisa A.
author_facet Haridas, Dhanya
Biffinger, Justin C.
Boyd, Thomas J.
Fulmer, Preston A.
Hamdan, Leila J.
Fitzgerald, Lisa A.
author_sort Haridas, Dhanya
collection PubMed
description Background: Shipwrecks serve as a rich source for novel microbial populations that have largely remained undiscovered. Low temperatures, lack of sunlight, and the availability of substrates derived from the shipwreck’s hull and cargo may provide an environment in which microbes can develop unique metabolic adaptations.   Methods: To test our hypothesis that shipwrecks could influence the microbial population involved in denitrification when a consortium is grown in the laboratory, we collected samples proximate to two steel shipwrecks in the northern Gulf of Mexico. Then under laboratory conditions, we grew two independent denitrifying microbial consortia. Each consortium was grown by using the BART assay system and analyzed based on growth kinetics, ion chromatography and 16S amplicon sequencing. Results: Both denitrifying consortia were different from each other based on varied growth profiles, rates of nitrate utilization and 16S amplicon sequencing. Conclusions: Our observations conclude that the laboratory grown water column microbial consortia from deep-sea shipwrecks in the Gulf of Mexico are able to undergo aggressive denitrification.
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spelling pubmed-60697302018-08-13 Laboratory growth of denitrifying water column microbial consortia from deep-sea shipwrecks in the northern Gulf of Mexico Haridas, Dhanya Biffinger, Justin C. Boyd, Thomas J. Fulmer, Preston A. Hamdan, Leila J. Fitzgerald, Lisa A. F1000Res Research Article Background: Shipwrecks serve as a rich source for novel microbial populations that have largely remained undiscovered. Low temperatures, lack of sunlight, and the availability of substrates derived from the shipwreck’s hull and cargo may provide an environment in which microbes can develop unique metabolic adaptations.   Methods: To test our hypothesis that shipwrecks could influence the microbial population involved in denitrification when a consortium is grown in the laboratory, we collected samples proximate to two steel shipwrecks in the northern Gulf of Mexico. Then under laboratory conditions, we grew two independent denitrifying microbial consortia. Each consortium was grown by using the BART assay system and analyzed based on growth kinetics, ion chromatography and 16S amplicon sequencing. Results: Both denitrifying consortia were different from each other based on varied growth profiles, rates of nitrate utilization and 16S amplicon sequencing. Conclusions: Our observations conclude that the laboratory grown water column microbial consortia from deep-sea shipwrecks in the Gulf of Mexico are able to undergo aggressive denitrification. F1000 Research Limited 2018-08-06 /pmc/articles/PMC6069730/ /pubmed/30109018 http://dx.doi.org/10.12688/f1000research.12713.3 Text en Copyright: © 2018 Haridas D et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Haridas, Dhanya
Biffinger, Justin C.
Boyd, Thomas J.
Fulmer, Preston A.
Hamdan, Leila J.
Fitzgerald, Lisa A.
Laboratory growth of denitrifying water column microbial consortia from deep-sea shipwrecks in the northern Gulf of Mexico
title Laboratory growth of denitrifying water column microbial consortia from deep-sea shipwrecks in the northern Gulf of Mexico
title_full Laboratory growth of denitrifying water column microbial consortia from deep-sea shipwrecks in the northern Gulf of Mexico
title_fullStr Laboratory growth of denitrifying water column microbial consortia from deep-sea shipwrecks in the northern Gulf of Mexico
title_full_unstemmed Laboratory growth of denitrifying water column microbial consortia from deep-sea shipwrecks in the northern Gulf of Mexico
title_short Laboratory growth of denitrifying water column microbial consortia from deep-sea shipwrecks in the northern Gulf of Mexico
title_sort laboratory growth of denitrifying water column microbial consortia from deep-sea shipwrecks in the northern gulf of mexico
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6069730/
https://www.ncbi.nlm.nih.gov/pubmed/30109018
http://dx.doi.org/10.12688/f1000research.12713.3
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