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A colorimetric assay to rapidly determine the activities of lytic polysaccharide monooxygenases
BACKGROUND: Lytic polysaccharide monooxygenase (LPMOs) are enzymes that catalyze the breakdown of polysaccharides in biomass and have excellent potential for biorefinery applications. However, their activities are relatively low, and methods to measure these activities are costly, tedious or often r...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6071379/ https://www.ncbi.nlm.nih.gov/pubmed/30083228 http://dx.doi.org/10.1186/s13068-018-1211-z |
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author | Wang, Damao Li, Jing Wong, Ann C. Y. Aachmann, Finn L. Hsieh, Yves S. Y. |
author_facet | Wang, Damao Li, Jing Wong, Ann C. Y. Aachmann, Finn L. Hsieh, Yves S. Y. |
author_sort | Wang, Damao |
collection | PubMed |
description | BACKGROUND: Lytic polysaccharide monooxygenase (LPMOs) are enzymes that catalyze the breakdown of polysaccharides in biomass and have excellent potential for biorefinery applications. However, their activities are relatively low, and methods to measure these activities are costly, tedious or often reflect only an apparent activity to the polysaccharide substrates. Here, we describe a new method we have developed that is simple to use to determine the activities of type-1 (C1-oxidizing) LPMOs. The method is based on quantifying the ionic binding of cations to carboxyl groups formed by the action of type-1 LPMOs on polysaccharides. It allows comparisons to be made of activities under different conditions. RESULTS: Based on the colorimetric detection and quantification of the pyrocatechol violet (PV)-Ni(2+) complex, we have developed an assay to reliably detect and quantify carboxylate moieties introduced by type-1 LPMOs. Conditions were optimized for determining the activities of specific LPMOs. Comparisons were made of the activities against cellulose and chitin of a novel AA10 LPMO and a recently reported family AA11 LPMO. Activities of both LPMOs were boosted by hydrogen peroxide in the 1st hour of the reaction, with a 16-fold increase for the family AA11 LPMO, and up to a 34-fold increase for the family AA10 LPMO. CONCLUSIONS: We developed a versatile colorimetric cation-based assay to determine the activities of type-1 LPMOs. The assay is quick, low cost and could be adapted for use in industrial biorefineries. |
format | Online Article Text |
id | pubmed-6071379 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-60713792018-08-06 A colorimetric assay to rapidly determine the activities of lytic polysaccharide monooxygenases Wang, Damao Li, Jing Wong, Ann C. Y. Aachmann, Finn L. Hsieh, Yves S. Y. Biotechnol Biofuels Methodology BACKGROUND: Lytic polysaccharide monooxygenase (LPMOs) are enzymes that catalyze the breakdown of polysaccharides in biomass and have excellent potential for biorefinery applications. However, their activities are relatively low, and methods to measure these activities are costly, tedious or often reflect only an apparent activity to the polysaccharide substrates. Here, we describe a new method we have developed that is simple to use to determine the activities of type-1 (C1-oxidizing) LPMOs. The method is based on quantifying the ionic binding of cations to carboxyl groups formed by the action of type-1 LPMOs on polysaccharides. It allows comparisons to be made of activities under different conditions. RESULTS: Based on the colorimetric detection and quantification of the pyrocatechol violet (PV)-Ni(2+) complex, we have developed an assay to reliably detect and quantify carboxylate moieties introduced by type-1 LPMOs. Conditions were optimized for determining the activities of specific LPMOs. Comparisons were made of the activities against cellulose and chitin of a novel AA10 LPMO and a recently reported family AA11 LPMO. Activities of both LPMOs were boosted by hydrogen peroxide in the 1st hour of the reaction, with a 16-fold increase for the family AA11 LPMO, and up to a 34-fold increase for the family AA10 LPMO. CONCLUSIONS: We developed a versatile colorimetric cation-based assay to determine the activities of type-1 LPMOs. The assay is quick, low cost and could be adapted for use in industrial biorefineries. BioMed Central 2018-08-02 /pmc/articles/PMC6071379/ /pubmed/30083228 http://dx.doi.org/10.1186/s13068-018-1211-z Text en © The Author(s) 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Methodology Wang, Damao Li, Jing Wong, Ann C. Y. Aachmann, Finn L. Hsieh, Yves S. Y. A colorimetric assay to rapidly determine the activities of lytic polysaccharide monooxygenases |
title | A colorimetric assay to rapidly determine the activities of lytic polysaccharide monooxygenases |
title_full | A colorimetric assay to rapidly determine the activities of lytic polysaccharide monooxygenases |
title_fullStr | A colorimetric assay to rapidly determine the activities of lytic polysaccharide monooxygenases |
title_full_unstemmed | A colorimetric assay to rapidly determine the activities of lytic polysaccharide monooxygenases |
title_short | A colorimetric assay to rapidly determine the activities of lytic polysaccharide monooxygenases |
title_sort | colorimetric assay to rapidly determine the activities of lytic polysaccharide monooxygenases |
topic | Methodology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6071379/ https://www.ncbi.nlm.nih.gov/pubmed/30083228 http://dx.doi.org/10.1186/s13068-018-1211-z |
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