Cargando…

Reproducibility and replicability of rodent phenotyping in preclinical studies

The scientific community is increasingly concerned with the proportion of published “discoveries” that are not replicated in subsequent studies. The field of rodent behavioral phenotyping was one of the first to raise this concern, and to relate it to other methodological issues: the complex interac...

Descripción completa

Detalles Bibliográficos
Autores principales: Kafkafi, Neri, Agassi, Joseph, Chesler, Elissa J., Crabbe, John C., Crusio, Wim E., Eilam, David, Gerlai, Robert, Golani, Ilan, Gomez-Marin, Alex, Heller, Ruth, Iraqi, Fuad, Jaljuli, Iman, Karp, Natasha A., Morgan, Hugh, Nicholson, George, Pfaff, Donald W., Richter, S. Helene, Stark, Philip B., Stiedl, Oliver, Stodden, Victoria, Tarantino, Lisa M., Tucci, Valter, Valdar, William, Williams, Robert W., Würbel, Hanno, Benjamini, Yoav
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6071910/
https://www.ncbi.nlm.nih.gov/pubmed/29357292
http://dx.doi.org/10.1016/j.neubiorev.2018.01.003
_version_ 1783343940242505728
author Kafkafi, Neri
Agassi, Joseph
Chesler, Elissa J.
Crabbe, John C.
Crusio, Wim E.
Eilam, David
Gerlai, Robert
Golani, Ilan
Gomez-Marin, Alex
Heller, Ruth
Iraqi, Fuad
Jaljuli, Iman
Karp, Natasha A.
Morgan, Hugh
Nicholson, George
Pfaff, Donald W.
Richter, S. Helene
Stark, Philip B.
Stiedl, Oliver
Stodden, Victoria
Tarantino, Lisa M.
Tucci, Valter
Valdar, William
Williams, Robert W.
Würbel, Hanno
Benjamini, Yoav
author_facet Kafkafi, Neri
Agassi, Joseph
Chesler, Elissa J.
Crabbe, John C.
Crusio, Wim E.
Eilam, David
Gerlai, Robert
Golani, Ilan
Gomez-Marin, Alex
Heller, Ruth
Iraqi, Fuad
Jaljuli, Iman
Karp, Natasha A.
Morgan, Hugh
Nicholson, George
Pfaff, Donald W.
Richter, S. Helene
Stark, Philip B.
Stiedl, Oliver
Stodden, Victoria
Tarantino, Lisa M.
Tucci, Valter
Valdar, William
Williams, Robert W.
Würbel, Hanno
Benjamini, Yoav
author_sort Kafkafi, Neri
collection PubMed
description The scientific community is increasingly concerned with the proportion of published “discoveries” that are not replicated in subsequent studies. The field of rodent behavioral phenotyping was one of the first to raise this concern, and to relate it to other methodological issues: the complex interaction between genotype and environment; the definitions of behavioral constructs; and the use of laboratory mice and rats as model species for investigating human health and disease mechanisms. In January 2015, researchers from various disciplines gathered at Tel Aviv University to discuss these issues. The general consensus was that the issue is prevalent and of concern, and should be addressed at the statistical, methodological and policy levels, but is not so severe as to call into question the validity and the usefulness of model organisms as a whole. Well-organized community efforts, coupled with improved data and metadata sharing, have a key role in identifying specific problems and promoting effective solutions. Replicability is closely related to validity, may affect generalizability and translation of findings, and has important ethical implications.
format Online
Article
Text
id pubmed-6071910
institution National Center for Biotechnology Information
language English
publishDate 2018
record_format MEDLINE/PubMed
spelling pubmed-60719102018-08-02 Reproducibility and replicability of rodent phenotyping in preclinical studies Kafkafi, Neri Agassi, Joseph Chesler, Elissa J. Crabbe, John C. Crusio, Wim E. Eilam, David Gerlai, Robert Golani, Ilan Gomez-Marin, Alex Heller, Ruth Iraqi, Fuad Jaljuli, Iman Karp, Natasha A. Morgan, Hugh Nicholson, George Pfaff, Donald W. Richter, S. Helene Stark, Philip B. Stiedl, Oliver Stodden, Victoria Tarantino, Lisa M. Tucci, Valter Valdar, William Williams, Robert W. Würbel, Hanno Benjamini, Yoav Neurosci Biobehav Rev Article The scientific community is increasingly concerned with the proportion of published “discoveries” that are not replicated in subsequent studies. The field of rodent behavioral phenotyping was one of the first to raise this concern, and to relate it to other methodological issues: the complex interaction between genotype and environment; the definitions of behavioral constructs; and the use of laboratory mice and rats as model species for investigating human health and disease mechanisms. In January 2015, researchers from various disciplines gathered at Tel Aviv University to discuss these issues. The general consensus was that the issue is prevalent and of concern, and should be addressed at the statistical, methodological and policy levels, but is not so severe as to call into question the validity and the usefulness of model organisms as a whole. Well-organized community efforts, coupled with improved data and metadata sharing, have a key role in identifying specific problems and promoting effective solutions. Replicability is closely related to validity, may affect generalizability and translation of findings, and has important ethical implications. 2018-01-31 2018-04 /pmc/articles/PMC6071910/ /pubmed/29357292 http://dx.doi.org/10.1016/j.neubiorev.2018.01.003 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/BY-NC-ND/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) ).
spellingShingle Article
Kafkafi, Neri
Agassi, Joseph
Chesler, Elissa J.
Crabbe, John C.
Crusio, Wim E.
Eilam, David
Gerlai, Robert
Golani, Ilan
Gomez-Marin, Alex
Heller, Ruth
Iraqi, Fuad
Jaljuli, Iman
Karp, Natasha A.
Morgan, Hugh
Nicholson, George
Pfaff, Donald W.
Richter, S. Helene
Stark, Philip B.
Stiedl, Oliver
Stodden, Victoria
Tarantino, Lisa M.
Tucci, Valter
Valdar, William
Williams, Robert W.
Würbel, Hanno
Benjamini, Yoav
Reproducibility and replicability of rodent phenotyping in preclinical studies
title Reproducibility and replicability of rodent phenotyping in preclinical studies
title_full Reproducibility and replicability of rodent phenotyping in preclinical studies
title_fullStr Reproducibility and replicability of rodent phenotyping in preclinical studies
title_full_unstemmed Reproducibility and replicability of rodent phenotyping in preclinical studies
title_short Reproducibility and replicability of rodent phenotyping in preclinical studies
title_sort reproducibility and replicability of rodent phenotyping in preclinical studies
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6071910/
https://www.ncbi.nlm.nih.gov/pubmed/29357292
http://dx.doi.org/10.1016/j.neubiorev.2018.01.003
work_keys_str_mv AT kafkafineri reproducibilityandreplicabilityofrodentphenotypinginpreclinicalstudies
AT agassijoseph reproducibilityandreplicabilityofrodentphenotypinginpreclinicalstudies
AT cheslerelissaj reproducibilityandreplicabilityofrodentphenotypinginpreclinicalstudies
AT crabbejohnc reproducibilityandreplicabilityofrodentphenotypinginpreclinicalstudies
AT crusiowime reproducibilityandreplicabilityofrodentphenotypinginpreclinicalstudies
AT eilamdavid reproducibilityandreplicabilityofrodentphenotypinginpreclinicalstudies
AT gerlairobert reproducibilityandreplicabilityofrodentphenotypinginpreclinicalstudies
AT golaniilan reproducibilityandreplicabilityofrodentphenotypinginpreclinicalstudies
AT gomezmarinalex reproducibilityandreplicabilityofrodentphenotypinginpreclinicalstudies
AT hellerruth reproducibilityandreplicabilityofrodentphenotypinginpreclinicalstudies
AT iraqifuad reproducibilityandreplicabilityofrodentphenotypinginpreclinicalstudies
AT jaljuliiman reproducibilityandreplicabilityofrodentphenotypinginpreclinicalstudies
AT karpnatashaa reproducibilityandreplicabilityofrodentphenotypinginpreclinicalstudies
AT morganhugh reproducibilityandreplicabilityofrodentphenotypinginpreclinicalstudies
AT nicholsongeorge reproducibilityandreplicabilityofrodentphenotypinginpreclinicalstudies
AT pfaffdonaldw reproducibilityandreplicabilityofrodentphenotypinginpreclinicalstudies
AT richtershelene reproducibilityandreplicabilityofrodentphenotypinginpreclinicalstudies
AT starkphilipb reproducibilityandreplicabilityofrodentphenotypinginpreclinicalstudies
AT stiedloliver reproducibilityandreplicabilityofrodentphenotypinginpreclinicalstudies
AT stoddenvictoria reproducibilityandreplicabilityofrodentphenotypinginpreclinicalstudies
AT tarantinolisam reproducibilityandreplicabilityofrodentphenotypinginpreclinicalstudies
AT tuccivalter reproducibilityandreplicabilityofrodentphenotypinginpreclinicalstudies
AT valdarwilliam reproducibilityandreplicabilityofrodentphenotypinginpreclinicalstudies
AT williamsrobertw reproducibilityandreplicabilityofrodentphenotypinginpreclinicalstudies
AT wurbelhanno reproducibilityandreplicabilityofrodentphenotypinginpreclinicalstudies
AT benjaminiyoav reproducibilityandreplicabilityofrodentphenotypinginpreclinicalstudies