Cargando…
A Post-pleistocene Calibrated Mutation Rate from Insect Museum Specimens
Quantifying the age of recent species divergence events can be challenging in the absence of calibration points within many groups. The katydid species Neoconocephalus lyristes provides the opportunity to calibrate a post-Pleistocene, taxa specific mutation rate using a known biogeographic event, th...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2018
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6072552/ https://www.ncbi.nlm.nih.gov/pubmed/30116653 http://dx.doi.org/10.1371/currents.tol.aba557de56be881793261f7e1565cf35 |
_version_ | 1783344025036652544 |
---|---|
author | Ney, Gideon Frederick, Katy Schul, Johannes |
author_facet | Ney, Gideon Frederick, Katy Schul, Johannes |
author_sort | Ney, Gideon |
collection | PubMed |
description | Quantifying the age of recent species divergence events can be challenging in the absence of calibration points within many groups. The katydid species Neoconocephalus lyristes provides the opportunity to calibrate a post-Pleistocene, taxa specific mutation rate using a known biogeographic event, the Mohawk-Hudson Divide. DNA was extracted from pinned museum specimens of N. lyristes from both Midwest and Atlantic populations and the mitochondrial gene COI sequenced using primers designed from extant specimens. Coalescent analyses using both strict and relaxed molecular clock models were performed in BEAST v1.8.2. The assumption of a strict molecular clock could not be rejected in favor of the relaxed clock model as the distribution of the standard deviation of the clock rate strongly abutted zero. The strict molecular clock model resulted in an intraspecific calculated mutation rate of 14.4-17.3 %/myr, a rate substantially higher than the common rates of sequence evolution observed for insect mitochondrial DNA sequences. The rate, however, aligns closely with mutation rates estimated from other taxa with similarly recent lineage divergence times. |
format | Online Article Text |
id | pubmed-6072552 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-60725522018-08-15 A Post-pleistocene Calibrated Mutation Rate from Insect Museum Specimens Ney, Gideon Frederick, Katy Schul, Johannes PLoS Curr Tree of Life Quantifying the age of recent species divergence events can be challenging in the absence of calibration points within many groups. The katydid species Neoconocephalus lyristes provides the opportunity to calibrate a post-Pleistocene, taxa specific mutation rate using a known biogeographic event, the Mohawk-Hudson Divide. DNA was extracted from pinned museum specimens of N. lyristes from both Midwest and Atlantic populations and the mitochondrial gene COI sequenced using primers designed from extant specimens. Coalescent analyses using both strict and relaxed molecular clock models were performed in BEAST v1.8.2. The assumption of a strict molecular clock could not be rejected in favor of the relaxed clock model as the distribution of the standard deviation of the clock rate strongly abutted zero. The strict molecular clock model resulted in an intraspecific calculated mutation rate of 14.4-17.3 %/myr, a rate substantially higher than the common rates of sequence evolution observed for insect mitochondrial DNA sequences. The rate, however, aligns closely with mutation rates estimated from other taxa with similarly recent lineage divergence times. Public Library of Science 2018-07-13 /pmc/articles/PMC6072552/ /pubmed/30116653 http://dx.doi.org/10.1371/currents.tol.aba557de56be881793261f7e1565cf35 Text en © 2018 Ney, Frederick, Schul, et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Tree of Life Ney, Gideon Frederick, Katy Schul, Johannes A Post-pleistocene Calibrated Mutation Rate from Insect Museum Specimens |
title | A Post-pleistocene Calibrated Mutation Rate from Insect Museum Specimens |
title_full | A Post-pleistocene Calibrated Mutation Rate from Insect Museum Specimens |
title_fullStr | A Post-pleistocene Calibrated Mutation Rate from Insect Museum Specimens |
title_full_unstemmed | A Post-pleistocene Calibrated Mutation Rate from Insect Museum Specimens |
title_short | A Post-pleistocene Calibrated Mutation Rate from Insect Museum Specimens |
title_sort | post-pleistocene calibrated mutation rate from insect museum specimens |
topic | Tree of Life |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6072552/ https://www.ncbi.nlm.nih.gov/pubmed/30116653 http://dx.doi.org/10.1371/currents.tol.aba557de56be881793261f7e1565cf35 |
work_keys_str_mv | AT neygideon apostpleistocenecalibratedmutationratefrominsectmuseumspecimens AT frederickkaty apostpleistocenecalibratedmutationratefrominsectmuseumspecimens AT schuljohannes apostpleistocenecalibratedmutationratefrominsectmuseumspecimens AT neygideon postpleistocenecalibratedmutationratefrominsectmuseumspecimens AT frederickkaty postpleistocenecalibratedmutationratefrominsectmuseumspecimens AT schuljohannes postpleistocenecalibratedmutationratefrominsectmuseumspecimens |