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A Post-pleistocene Calibrated Mutation Rate from Insect Museum Specimens

Quantifying the age of recent species divergence events can be challenging in the absence of calibration points within many groups. The katydid species Neoconocephalus lyristes provides the opportunity to calibrate a post-Pleistocene, taxa specific mutation rate using a known biogeographic event, th...

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Autores principales: Ney, Gideon, Frederick, Katy, Schul, Johannes
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6072552/
https://www.ncbi.nlm.nih.gov/pubmed/30116653
http://dx.doi.org/10.1371/currents.tol.aba557de56be881793261f7e1565cf35
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author Ney, Gideon
Frederick, Katy
Schul, Johannes
author_facet Ney, Gideon
Frederick, Katy
Schul, Johannes
author_sort Ney, Gideon
collection PubMed
description Quantifying the age of recent species divergence events can be challenging in the absence of calibration points within many groups. The katydid species Neoconocephalus lyristes provides the opportunity to calibrate a post-Pleistocene, taxa specific mutation rate using a known biogeographic event, the Mohawk-Hudson Divide. DNA was extracted from pinned museum specimens of N. lyristes from both Midwest and Atlantic populations and the mitochondrial gene COI sequenced using primers designed from extant specimens. Coalescent analyses using both strict and relaxed molecular clock models were performed in BEAST v1.8.2. The assumption of a strict molecular clock could not be rejected in favor of the relaxed clock model as the distribution of the standard deviation of the clock rate strongly abutted zero. The strict molecular clock model resulted in an intraspecific calculated mutation rate of 14.4-17.3 %/myr, a rate substantially higher than the common rates of sequence evolution observed for insect mitochondrial DNA sequences. The rate, however, aligns closely with mutation rates estimated from other taxa with similarly recent lineage divergence times.
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spelling pubmed-60725522018-08-15 A Post-pleistocene Calibrated Mutation Rate from Insect Museum Specimens Ney, Gideon Frederick, Katy Schul, Johannes PLoS Curr Tree of Life Quantifying the age of recent species divergence events can be challenging in the absence of calibration points within many groups. The katydid species Neoconocephalus lyristes provides the opportunity to calibrate a post-Pleistocene, taxa specific mutation rate using a known biogeographic event, the Mohawk-Hudson Divide. DNA was extracted from pinned museum specimens of N. lyristes from both Midwest and Atlantic populations and the mitochondrial gene COI sequenced using primers designed from extant specimens. Coalescent analyses using both strict and relaxed molecular clock models were performed in BEAST v1.8.2. The assumption of a strict molecular clock could not be rejected in favor of the relaxed clock model as the distribution of the standard deviation of the clock rate strongly abutted zero. The strict molecular clock model resulted in an intraspecific calculated mutation rate of 14.4-17.3 %/myr, a rate substantially higher than the common rates of sequence evolution observed for insect mitochondrial DNA sequences. The rate, however, aligns closely with mutation rates estimated from other taxa with similarly recent lineage divergence times. Public Library of Science 2018-07-13 /pmc/articles/PMC6072552/ /pubmed/30116653 http://dx.doi.org/10.1371/currents.tol.aba557de56be881793261f7e1565cf35 Text en © 2018 Ney, Frederick, Schul, et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Tree of Life
Ney, Gideon
Frederick, Katy
Schul, Johannes
A Post-pleistocene Calibrated Mutation Rate from Insect Museum Specimens
title A Post-pleistocene Calibrated Mutation Rate from Insect Museum Specimens
title_full A Post-pleistocene Calibrated Mutation Rate from Insect Museum Specimens
title_fullStr A Post-pleistocene Calibrated Mutation Rate from Insect Museum Specimens
title_full_unstemmed A Post-pleistocene Calibrated Mutation Rate from Insect Museum Specimens
title_short A Post-pleistocene Calibrated Mutation Rate from Insect Museum Specimens
title_sort post-pleistocene calibrated mutation rate from insect museum specimens
topic Tree of Life
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6072552/
https://www.ncbi.nlm.nih.gov/pubmed/30116653
http://dx.doi.org/10.1371/currents.tol.aba557de56be881793261f7e1565cf35
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