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Crystal structures of 2-aminopyridine citric acid salts: C(5)H(7)N(2) (+)·C(6)H(7)O(7) (−) and 3C(5)H(7)N(2) (+)·C(6)H(5)O(7) (3−)
2-Aminopyridine and citric acid mixed in 1:1 and 3:1 ratios in ethanol yielded crystals of two 2-aminopyridinium citrate salts, viz. C(5)H(7)N(2) (+)·C(6)H(7)O(7) (−) (I) (systematic name: 2-aminopyridin-1-ium 3-carboxy-2-carboxymethyl-2-hydroxypropanoate), and 3C(5)H(7)N(2) (+)·C(6)H(5)O(7...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6073010/ https://www.ncbi.nlm.nih.gov/pubmed/30116573 http://dx.doi.org/10.1107/S2056989018009787 |
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author | Prakash, Shet M. Naveen, S. Lokanath, N. K. Suchetan, P. A. Warad, Ismail |
author_facet | Prakash, Shet M. Naveen, S. Lokanath, N. K. Suchetan, P. A. Warad, Ismail |
author_sort | Prakash, Shet M. |
collection | PubMed |
description | 2-Aminopyridine and citric acid mixed in 1:1 and 3:1 ratios in ethanol yielded crystals of two 2-aminopyridinium citrate salts, viz. C(5)H(7)N(2) (+)·C(6)H(7)O(7) (−) (I) (systematic name: 2-aminopyridin-1-ium 3-carboxy-2-carboxymethyl-2-hydroxypropanoate), and 3C(5)H(7)N(2) (+)·C(6)H(5)O(7) (3−) (II) [systematic name: tris(2-aminopyridin-1-ium) 2-hydroxypropane-1,2,3-tricarboxylate]. The supramolecular synthons present are analysed and their effect upon the crystal packing is presented in the context of crystal engineering. Salt I is formed by the protonation of the pyridine N atom and deprotonation of the central carboxylic group of citric acid, while in II all three carboxylic groups of the acid are deprotonated and the charges are compensated for by three 2-aminopyridinium cations. In both structures, a complex supramolecular three-dimensional architecture is formed. In I, the supramolecular aggregation results from N(amino)—H⋯O(acid), O(acid)⋯H—O(acid), O(alcohol)—H⋯O(acid), N(amino)—H⋯O(alcohol), N(py)—H⋯O(alcohol) and C(ar)—H⋯O(acid) interactions. The molecular conformation of the citrate ion (CA(3−)) in II is stabilized by an intramolecular O(alcohol)—H⋯O(acid) hydrogen bond that encloses an S(6) ring motif. The complex three-dimensional structure of II features N(amino)—H⋯O(acid), N(py)—H⋯O(acid) and several C(ar)—H⋯O(acid) hydrogen bonds. In the crystal of I, the common charge-assisted 2-aminopyridinium–carboxylate heterosynthon exhibited in many 2-aminopyridinium carboxylates is not observed, instead chains of N—H⋯O hydrogen bonds and hetero O—H⋯O dimers are formed. In the crystal of II, the 2-aminopyridinium–carboxylate heterosynthon is sustained, while hetero O—H⋯O dimers are not observed. The crystal structures of both salts display a variety of hydrogen bonds as almost all of the hydrogen-bond donors and acceptors present are involved in hydrogen bonding. |
format | Online Article Text |
id | pubmed-6073010 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-60730102018-08-16 Crystal structures of 2-aminopyridine citric acid salts: C(5)H(7)N(2) (+)·C(6)H(7)O(7) (−) and 3C(5)H(7)N(2) (+)·C(6)H(5)O(7) (3−) Prakash, Shet M. Naveen, S. Lokanath, N. K. Suchetan, P. A. Warad, Ismail Acta Crystallogr E Crystallogr Commun Research Communications 2-Aminopyridine and citric acid mixed in 1:1 and 3:1 ratios in ethanol yielded crystals of two 2-aminopyridinium citrate salts, viz. C(5)H(7)N(2) (+)·C(6)H(7)O(7) (−) (I) (systematic name: 2-aminopyridin-1-ium 3-carboxy-2-carboxymethyl-2-hydroxypropanoate), and 3C(5)H(7)N(2) (+)·C(6)H(5)O(7) (3−) (II) [systematic name: tris(2-aminopyridin-1-ium) 2-hydroxypropane-1,2,3-tricarboxylate]. The supramolecular synthons present are analysed and their effect upon the crystal packing is presented in the context of crystal engineering. Salt I is formed by the protonation of the pyridine N atom and deprotonation of the central carboxylic group of citric acid, while in II all three carboxylic groups of the acid are deprotonated and the charges are compensated for by three 2-aminopyridinium cations. In both structures, a complex supramolecular three-dimensional architecture is formed. In I, the supramolecular aggregation results from N(amino)—H⋯O(acid), O(acid)⋯H—O(acid), O(alcohol)—H⋯O(acid), N(amino)—H⋯O(alcohol), N(py)—H⋯O(alcohol) and C(ar)—H⋯O(acid) interactions. The molecular conformation of the citrate ion (CA(3−)) in II is stabilized by an intramolecular O(alcohol)—H⋯O(acid) hydrogen bond that encloses an S(6) ring motif. The complex three-dimensional structure of II features N(amino)—H⋯O(acid), N(py)—H⋯O(acid) and several C(ar)—H⋯O(acid) hydrogen bonds. In the crystal of I, the common charge-assisted 2-aminopyridinium–carboxylate heterosynthon exhibited in many 2-aminopyridinium carboxylates is not observed, instead chains of N—H⋯O hydrogen bonds and hetero O—H⋯O dimers are formed. In the crystal of II, the 2-aminopyridinium–carboxylate heterosynthon is sustained, while hetero O—H⋯O dimers are not observed. The crystal structures of both salts display a variety of hydrogen bonds as almost all of the hydrogen-bond donors and acceptors present are involved in hydrogen bonding. International Union of Crystallography 2018-07-17 /pmc/articles/PMC6073010/ /pubmed/30116573 http://dx.doi.org/10.1107/S2056989018009787 Text en © Prakash et al. 2018 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/2.0/uk/ |
spellingShingle | Research Communications Prakash, Shet M. Naveen, S. Lokanath, N. K. Suchetan, P. A. Warad, Ismail Crystal structures of 2-aminopyridine citric acid salts: C(5)H(7)N(2) (+)·C(6)H(7)O(7) (−) and 3C(5)H(7)N(2) (+)·C(6)H(5)O(7) (3−) |
title | Crystal structures of 2-aminopyridine citric acid salts: C(5)H(7)N(2)
(+)·C(6)H(7)O(7)
(−) and 3C(5)H(7)N(2)
(+)·C(6)H(5)O(7)
(3−)
|
title_full | Crystal structures of 2-aminopyridine citric acid salts: C(5)H(7)N(2)
(+)·C(6)H(7)O(7)
(−) and 3C(5)H(7)N(2)
(+)·C(6)H(5)O(7)
(3−)
|
title_fullStr | Crystal structures of 2-aminopyridine citric acid salts: C(5)H(7)N(2)
(+)·C(6)H(7)O(7)
(−) and 3C(5)H(7)N(2)
(+)·C(6)H(5)O(7)
(3−)
|
title_full_unstemmed | Crystal structures of 2-aminopyridine citric acid salts: C(5)H(7)N(2)
(+)·C(6)H(7)O(7)
(−) and 3C(5)H(7)N(2)
(+)·C(6)H(5)O(7)
(3−)
|
title_short | Crystal structures of 2-aminopyridine citric acid salts: C(5)H(7)N(2)
(+)·C(6)H(7)O(7)
(−) and 3C(5)H(7)N(2)
(+)·C(6)H(5)O(7)
(3−)
|
title_sort | crystal structures of 2-aminopyridine citric acid salts: c(5)h(7)n(2)
(+)·c(6)h(7)o(7)
(−) and 3c(5)h(7)n(2)
(+)·c(6)h(5)o(7)
(3−) |
topic | Research Communications |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6073010/ https://www.ncbi.nlm.nih.gov/pubmed/30116573 http://dx.doi.org/10.1107/S2056989018009787 |
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