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­­­A web resource for nutrient use efficiency-related genes, quantitative trait loci and microRNAs in important cereals and model plants

Cereals are key contributors to global food security. Genes involved in the uptake (transport), assimilation and utilization of macro- and micronutrients are responsible for the presence of these nutrients in grain and straw. Although many genomic databases for cereals are available, there is curren...

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Autores principales: Kumar, Anuj, Pandeya, Ajay, Malik, Girik, Sharma, Mansi, P., Hima Kumari, S., Anil Kumar, Gahlaut, Vijay, Gajula, M.N.V. Prasad, Singh, Krishna Pal, Suravajhala, Prashanth, Balyan, Harindra Singh, Gupta, Pushpendra K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000 Research Limited 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6073097/
https://www.ncbi.nlm.nih.gov/pubmed/30135718
http://dx.doi.org/10.12688/f1000research.14561.1
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author Kumar, Anuj
Pandeya, Ajay
Malik, Girik
Sharma, Mansi
P., Hima Kumari
S., Anil Kumar
Gahlaut, Vijay
Gajula, M.N.V. Prasad
Singh, Krishna Pal
Suravajhala, Prashanth
Balyan, Harindra Singh
Gupta, Pushpendra K.
author_facet Kumar, Anuj
Pandeya, Ajay
Malik, Girik
Sharma, Mansi
P., Hima Kumari
S., Anil Kumar
Gahlaut, Vijay
Gajula, M.N.V. Prasad
Singh, Krishna Pal
Suravajhala, Prashanth
Balyan, Harindra Singh
Gupta, Pushpendra K.
author_sort Kumar, Anuj
collection PubMed
description Cereals are key contributors to global food security. Genes involved in the uptake (transport), assimilation and utilization of macro- and micronutrients are responsible for the presence of these nutrients in grain and straw. Although many genomic databases for cereals are available, there is currently no cohesive web resource of manually curated nutrient use efficiency (NtUE)-related genes and quantitative trait loci (QTLs). In this study, we present a web-resource containing information on NtUE-related genes/QTLs and the corresponding available microRNAs for some of these genes in four major cereal crops (wheat ( Triticum aestivum), rice ( Oryza sativa), maize ( Zea mays), barley ( Hordeum vulgare)), two alien species related to wheat ( Triticum urartu and Aegilops tauschii), and two model species ( Brachypodium distachyon and Arabidopsis thaliana). Gene annotations integrated in the current web resource were manually curated from the existing databases and the available literature. The primary goal of developing this web resource is to provide descriptions of the NtUE-related genes and their functional annotation. MicroRNAs targeting some of the NtUE related genes and the QTLs for NtUE-related traits are also included. The genomic information embedded in the web resource should help users to search for the desired information.
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spelling pubmed-60730972018-08-21 ­­­A web resource for nutrient use efficiency-related genes, quantitative trait loci and microRNAs in important cereals and model plants Kumar, Anuj Pandeya, Ajay Malik, Girik Sharma, Mansi P., Hima Kumari S., Anil Kumar Gahlaut, Vijay Gajula, M.N.V. Prasad Singh, Krishna Pal Suravajhala, Prashanth Balyan, Harindra Singh Gupta, Pushpendra K. F1000Res Software Tool Article Cereals are key contributors to global food security. Genes involved in the uptake (transport), assimilation and utilization of macro- and micronutrients are responsible for the presence of these nutrients in grain and straw. Although many genomic databases for cereals are available, there is currently no cohesive web resource of manually curated nutrient use efficiency (NtUE)-related genes and quantitative trait loci (QTLs). In this study, we present a web-resource containing information on NtUE-related genes/QTLs and the corresponding available microRNAs for some of these genes in four major cereal crops (wheat ( Triticum aestivum), rice ( Oryza sativa), maize ( Zea mays), barley ( Hordeum vulgare)), two alien species related to wheat ( Triticum urartu and Aegilops tauschii), and two model species ( Brachypodium distachyon and Arabidopsis thaliana). Gene annotations integrated in the current web resource were manually curated from the existing databases and the available literature. The primary goal of developing this web resource is to provide descriptions of the NtUE-related genes and their functional annotation. MicroRNAs targeting some of the NtUE related genes and the QTLs for NtUE-related traits are also included. The genomic information embedded in the web resource should help users to search for the desired information. F1000 Research Limited 2018-05-29 /pmc/articles/PMC6073097/ /pubmed/30135718 http://dx.doi.org/10.12688/f1000research.14561.1 Text en Copyright: © 2018 Kumar A et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Software Tool Article
Kumar, Anuj
Pandeya, Ajay
Malik, Girik
Sharma, Mansi
P., Hima Kumari
S., Anil Kumar
Gahlaut, Vijay
Gajula, M.N.V. Prasad
Singh, Krishna Pal
Suravajhala, Prashanth
Balyan, Harindra Singh
Gupta, Pushpendra K.
­­­A web resource for nutrient use efficiency-related genes, quantitative trait loci and microRNAs in important cereals and model plants
title ­­­A web resource for nutrient use efficiency-related genes, quantitative trait loci and microRNAs in important cereals and model plants
title_full ­­­A web resource for nutrient use efficiency-related genes, quantitative trait loci and microRNAs in important cereals and model plants
title_fullStr ­­­A web resource for nutrient use efficiency-related genes, quantitative trait loci and microRNAs in important cereals and model plants
title_full_unstemmed ­­­A web resource for nutrient use efficiency-related genes, quantitative trait loci and microRNAs in important cereals and model plants
title_short ­­­A web resource for nutrient use efficiency-related genes, quantitative trait loci and microRNAs in important cereals and model plants
title_sort ­­­a web resource for nutrient use efficiency-related genes, quantitative trait loci and micrornas in important cereals and model plants
topic Software Tool Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6073097/
https://www.ncbi.nlm.nih.gov/pubmed/30135718
http://dx.doi.org/10.12688/f1000research.14561.1
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