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A web resource for nutrient use efficiency-related genes, quantitative trait loci and microRNAs in important cereals and model plants
Cereals are key contributors to global food security. Genes involved in the uptake (transport), assimilation and utilization of macro- and micronutrients are responsible for the presence of these nutrients in grain and straw. Although many genomic databases for cereals are available, there is curren...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
F1000 Research Limited
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6073097/ https://www.ncbi.nlm.nih.gov/pubmed/30135718 http://dx.doi.org/10.12688/f1000research.14561.1 |
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author | Kumar, Anuj Pandeya, Ajay Malik, Girik Sharma, Mansi P., Hima Kumari S., Anil Kumar Gahlaut, Vijay Gajula, M.N.V. Prasad Singh, Krishna Pal Suravajhala, Prashanth Balyan, Harindra Singh Gupta, Pushpendra K. |
author_facet | Kumar, Anuj Pandeya, Ajay Malik, Girik Sharma, Mansi P., Hima Kumari S., Anil Kumar Gahlaut, Vijay Gajula, M.N.V. Prasad Singh, Krishna Pal Suravajhala, Prashanth Balyan, Harindra Singh Gupta, Pushpendra K. |
author_sort | Kumar, Anuj |
collection | PubMed |
description | Cereals are key contributors to global food security. Genes involved in the uptake (transport), assimilation and utilization of macro- and micronutrients are responsible for the presence of these nutrients in grain and straw. Although many genomic databases for cereals are available, there is currently no cohesive web resource of manually curated nutrient use efficiency (NtUE)-related genes and quantitative trait loci (QTLs). In this study, we present a web-resource containing information on NtUE-related genes/QTLs and the corresponding available microRNAs for some of these genes in four major cereal crops (wheat ( Triticum aestivum), rice ( Oryza sativa), maize ( Zea mays), barley ( Hordeum vulgare)), two alien species related to wheat ( Triticum urartu and Aegilops tauschii), and two model species ( Brachypodium distachyon and Arabidopsis thaliana). Gene annotations integrated in the current web resource were manually curated from the existing databases and the available literature. The primary goal of developing this web resource is to provide descriptions of the NtUE-related genes and their functional annotation. MicroRNAs targeting some of the NtUE related genes and the QTLs for NtUE-related traits are also included. The genomic information embedded in the web resource should help users to search for the desired information. |
format | Online Article Text |
id | pubmed-6073097 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | F1000 Research Limited |
record_format | MEDLINE/PubMed |
spelling | pubmed-60730972018-08-21 A web resource for nutrient use efficiency-related genes, quantitative trait loci and microRNAs in important cereals and model plants Kumar, Anuj Pandeya, Ajay Malik, Girik Sharma, Mansi P., Hima Kumari S., Anil Kumar Gahlaut, Vijay Gajula, M.N.V. Prasad Singh, Krishna Pal Suravajhala, Prashanth Balyan, Harindra Singh Gupta, Pushpendra K. F1000Res Software Tool Article Cereals are key contributors to global food security. Genes involved in the uptake (transport), assimilation and utilization of macro- and micronutrients are responsible for the presence of these nutrients in grain and straw. Although many genomic databases for cereals are available, there is currently no cohesive web resource of manually curated nutrient use efficiency (NtUE)-related genes and quantitative trait loci (QTLs). In this study, we present a web-resource containing information on NtUE-related genes/QTLs and the corresponding available microRNAs for some of these genes in four major cereal crops (wheat ( Triticum aestivum), rice ( Oryza sativa), maize ( Zea mays), barley ( Hordeum vulgare)), two alien species related to wheat ( Triticum urartu and Aegilops tauschii), and two model species ( Brachypodium distachyon and Arabidopsis thaliana). Gene annotations integrated in the current web resource were manually curated from the existing databases and the available literature. The primary goal of developing this web resource is to provide descriptions of the NtUE-related genes and their functional annotation. MicroRNAs targeting some of the NtUE related genes and the QTLs for NtUE-related traits are also included. The genomic information embedded in the web resource should help users to search for the desired information. F1000 Research Limited 2018-05-29 /pmc/articles/PMC6073097/ /pubmed/30135718 http://dx.doi.org/10.12688/f1000research.14561.1 Text en Copyright: © 2018 Kumar A et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Software Tool Article Kumar, Anuj Pandeya, Ajay Malik, Girik Sharma, Mansi P., Hima Kumari S., Anil Kumar Gahlaut, Vijay Gajula, M.N.V. Prasad Singh, Krishna Pal Suravajhala, Prashanth Balyan, Harindra Singh Gupta, Pushpendra K. A web resource for nutrient use efficiency-related genes, quantitative trait loci and microRNAs in important cereals and model plants |
title |
A web resource for nutrient use efficiency-related genes, quantitative trait loci and microRNAs in important cereals and model plants |
title_full |
A web resource for nutrient use efficiency-related genes, quantitative trait loci and microRNAs in important cereals and model plants |
title_fullStr |
A web resource for nutrient use efficiency-related genes, quantitative trait loci and microRNAs in important cereals and model plants |
title_full_unstemmed |
A web resource for nutrient use efficiency-related genes, quantitative trait loci and microRNAs in important cereals and model plants |
title_short |
A web resource for nutrient use efficiency-related genes, quantitative trait loci and microRNAs in important cereals and model plants |
title_sort | a web resource for nutrient use efficiency-related genes, quantitative trait loci and micrornas in important cereals and model plants |
topic | Software Tool Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6073097/ https://www.ncbi.nlm.nih.gov/pubmed/30135718 http://dx.doi.org/10.12688/f1000research.14561.1 |
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