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Low expression of aging-related NRXN3 is associated with Alzheimer disease: A systematic review and meta-analysis
BACKGROUND: Alzheimer disease (AD) is a common neurodegenerative disorder with distinct pathological features, with aging considered the greatest risk factor. We explored how aging contributes to increased AD risk, and determined concurrent and coordinate changes (including genetic and phenotypic mo...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Wolters Kluwer Health
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6076205/ https://www.ncbi.nlm.nih.gov/pubmed/29995770 http://dx.doi.org/10.1097/MD.0000000000011343 |
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author | Zheng, Jun-Juan Li, Wen-Xing Liu, Jia-Qian Guo, Yi-Cheng Wang, Qian Li, Gong-Hua Dai, Shao-Xing Huang, Jing-Fei |
author_facet | Zheng, Jun-Juan Li, Wen-Xing Liu, Jia-Qian Guo, Yi-Cheng Wang, Qian Li, Gong-Hua Dai, Shao-Xing Huang, Jing-Fei |
author_sort | Zheng, Jun-Juan |
collection | PubMed |
description | BACKGROUND: Alzheimer disease (AD) is a common neurodegenerative disorder with distinct pathological features, with aging considered the greatest risk factor. We explored how aging contributes to increased AD risk, and determined concurrent and coordinate changes (including genetic and phenotypic modifications) commonly exhibited in both normal aging and AD. METHODS: Using the Gene Expression Omnibus (GEO) database, we collected 1 healthy aging-related and 3 AD-related datasets of the hippocampal region. The normal aging dataset was divided into 3 age groups: young (20–40 years old), middle-aged (40–60 years old), and elderly (>60 years old). These datasets were used to analyze the differentially expressed genes (DEGs). The Gene Ontology (GO) terms, pathways, and function network analysis of these DEGs were analyzed. RESULTS: One thousand two hundred ninety-one DEGs were found to be shared in the natural aging groups and AD patients. Among the shared DEGs, ATP6V1E1, GNG3, NDUFV2, GOT1, USP14, and NAV2 have been previously found in both normal aging individuals and AD patients. Furthermore, using Java Enrichment of Pathways Extended to Topology (JEPETTO) analysis based on Kyoto Encyclopedia of Genes and Genomes (KEGG) database, we determined that changes in aging-related KEGG annotations may contribute to the aging-dependence of AD risk. Interestingly, NRXN3, the second most commonly deregulated gene identified in the present study, is known to carry a mutation in AD patients. According to functional network analysis, NRXN3 plays a critical role in synaptic functions involved in the cognitive decline associated with normal aging and AD. CONCLUSION: Our results indicate that the low expression of aging-related NRXN3 may increase AD risk, though the potential mechanism requires further clarification. |
format | Online Article Text |
id | pubmed-6076205 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Wolters Kluwer Health |
record_format | MEDLINE/PubMed |
spelling | pubmed-60762052018-08-17 Low expression of aging-related NRXN3 is associated with Alzheimer disease: A systematic review and meta-analysis Zheng, Jun-Juan Li, Wen-Xing Liu, Jia-Qian Guo, Yi-Cheng Wang, Qian Li, Gong-Hua Dai, Shao-Xing Huang, Jing-Fei Medicine (Baltimore) Research Article BACKGROUND: Alzheimer disease (AD) is a common neurodegenerative disorder with distinct pathological features, with aging considered the greatest risk factor. We explored how aging contributes to increased AD risk, and determined concurrent and coordinate changes (including genetic and phenotypic modifications) commonly exhibited in both normal aging and AD. METHODS: Using the Gene Expression Omnibus (GEO) database, we collected 1 healthy aging-related and 3 AD-related datasets of the hippocampal region. The normal aging dataset was divided into 3 age groups: young (20–40 years old), middle-aged (40–60 years old), and elderly (>60 years old). These datasets were used to analyze the differentially expressed genes (DEGs). The Gene Ontology (GO) terms, pathways, and function network analysis of these DEGs were analyzed. RESULTS: One thousand two hundred ninety-one DEGs were found to be shared in the natural aging groups and AD patients. Among the shared DEGs, ATP6V1E1, GNG3, NDUFV2, GOT1, USP14, and NAV2 have been previously found in both normal aging individuals and AD patients. Furthermore, using Java Enrichment of Pathways Extended to Topology (JEPETTO) analysis based on Kyoto Encyclopedia of Genes and Genomes (KEGG) database, we determined that changes in aging-related KEGG annotations may contribute to the aging-dependence of AD risk. Interestingly, NRXN3, the second most commonly deregulated gene identified in the present study, is known to carry a mutation in AD patients. According to functional network analysis, NRXN3 plays a critical role in synaptic functions involved in the cognitive decline associated with normal aging and AD. CONCLUSION: Our results indicate that the low expression of aging-related NRXN3 may increase AD risk, though the potential mechanism requires further clarification. Wolters Kluwer Health 2018-07-13 /pmc/articles/PMC6076205/ /pubmed/29995770 http://dx.doi.org/10.1097/MD.0000000000011343 Text en Copyright © 2018 the Author(s). Published by Wolters Kluwer Health, Inc. http://creativecommons.org/licenses/by-nc-nd/4.0 This is an open access article distributed under the terms of the Creative Commons Attribution-Non Commercial-No Derivatives License 4.0 (CCBY-NC-ND), where it is permissible to download and share the work provided it is properly cited. The work cannot be changed in any way or used commercially without permission from the journal. http://creativecommons.org/licenses/by-nc-nd/4.0 |
spellingShingle | Research Article Zheng, Jun-Juan Li, Wen-Xing Liu, Jia-Qian Guo, Yi-Cheng Wang, Qian Li, Gong-Hua Dai, Shao-Xing Huang, Jing-Fei Low expression of aging-related NRXN3 is associated with Alzheimer disease: A systematic review and meta-analysis |
title | Low expression of aging-related NRXN3 is associated with Alzheimer disease: A systematic review and meta-analysis |
title_full | Low expression of aging-related NRXN3 is associated with Alzheimer disease: A systematic review and meta-analysis |
title_fullStr | Low expression of aging-related NRXN3 is associated with Alzheimer disease: A systematic review and meta-analysis |
title_full_unstemmed | Low expression of aging-related NRXN3 is associated with Alzheimer disease: A systematic review and meta-analysis |
title_short | Low expression of aging-related NRXN3 is associated with Alzheimer disease: A systematic review and meta-analysis |
title_sort | low expression of aging-related nrxn3 is associated with alzheimer disease: a systematic review and meta-analysis |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6076205/ https://www.ncbi.nlm.nih.gov/pubmed/29995770 http://dx.doi.org/10.1097/MD.0000000000011343 |
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