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Identification and Analysis of Human Sex-biased MicroRNAs

Sex differences are widely observed under various circumstances ranging from physiological processes to therapeutic responses, and a myriad of sex-biased genes have been identified. In recent years, transcriptomic datasets of microRNAs (miRNAs), an important class of non-coding RNAs, become increasi...

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Autores principales: Cui, Chunmei, Yang, Weili, Shi, Jiangcheng, Zhou, Yong, Yang, Jichun, Cui, Qinghua, Zhou, Yuan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6076379/
https://www.ncbi.nlm.nih.gov/pubmed/30005964
http://dx.doi.org/10.1016/j.gpb.2018.03.004
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author Cui, Chunmei
Yang, Weili
Shi, Jiangcheng
Zhou, Yong
Yang, Jichun
Cui, Qinghua
Zhou, Yuan
author_facet Cui, Chunmei
Yang, Weili
Shi, Jiangcheng
Zhou, Yong
Yang, Jichun
Cui, Qinghua
Zhou, Yuan
author_sort Cui, Chunmei
collection PubMed
description Sex differences are widely observed under various circumstances ranging from physiological processes to therapeutic responses, and a myriad of sex-biased genes have been identified. In recent years, transcriptomic datasets of microRNAs (miRNAs), an important class of non-coding RNAs, become increasingly accessible. However, comprehensive analysis of sex difference in miRNA expression has not been performed. Here, we identified the differentially-expressed miRNAs between males and females by examining the transcriptomic datasets available in public databases and conducted a systemic analysis of their biological characteristics. Consequently, we identified 73 female-biased miRNAs (FmiRs) and 163 male-biased miRNAs (MmiRs) across four tissues including brain, colorectal mucosa, peripheral blood, and cord blood. Our results suggest that compared to FmiRs, MmiRs tend to be clustered in the human genome and exhibit higher evolutionary rate, higher expression tissue specificity, and lower disease spectrum width. In addition, functional enrichment analysis of miRNAs show that FmiR genes are significantly associated with metabolism process and cell cycle process, whereas MmiR genes tend to be enriched for functions like histone modification and circadian rhythm. In all, the identification and analysis of sex-biased miRNAs together could provide new insights into the biological differences between females and males and facilitate the exploration of sex-biased disease susceptibility and therapy.
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spelling pubmed-60763792018-08-09 Identification and Analysis of Human Sex-biased MicroRNAs Cui, Chunmei Yang, Weili Shi, Jiangcheng Zhou, Yong Yang, Jichun Cui, Qinghua Zhou, Yuan Genomics Proteomics Bioinformatics Original Research Sex differences are widely observed under various circumstances ranging from physiological processes to therapeutic responses, and a myriad of sex-biased genes have been identified. In recent years, transcriptomic datasets of microRNAs (miRNAs), an important class of non-coding RNAs, become increasingly accessible. However, comprehensive analysis of sex difference in miRNA expression has not been performed. Here, we identified the differentially-expressed miRNAs between males and females by examining the transcriptomic datasets available in public databases and conducted a systemic analysis of their biological characteristics. Consequently, we identified 73 female-biased miRNAs (FmiRs) and 163 male-biased miRNAs (MmiRs) across four tissues including brain, colorectal mucosa, peripheral blood, and cord blood. Our results suggest that compared to FmiRs, MmiRs tend to be clustered in the human genome and exhibit higher evolutionary rate, higher expression tissue specificity, and lower disease spectrum width. In addition, functional enrichment analysis of miRNAs show that FmiR genes are significantly associated with metabolism process and cell cycle process, whereas MmiR genes tend to be enriched for functions like histone modification and circadian rhythm. In all, the identification and analysis of sex-biased miRNAs together could provide new insights into the biological differences between females and males and facilitate the exploration of sex-biased disease susceptibility and therapy. Elsevier 2018-06 2018-07-11 /pmc/articles/PMC6076379/ /pubmed/30005964 http://dx.doi.org/10.1016/j.gpb.2018.03.004 Text en © 2018 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Original Research
Cui, Chunmei
Yang, Weili
Shi, Jiangcheng
Zhou, Yong
Yang, Jichun
Cui, Qinghua
Zhou, Yuan
Identification and Analysis of Human Sex-biased MicroRNAs
title Identification and Analysis of Human Sex-biased MicroRNAs
title_full Identification and Analysis of Human Sex-biased MicroRNAs
title_fullStr Identification and Analysis of Human Sex-biased MicroRNAs
title_full_unstemmed Identification and Analysis of Human Sex-biased MicroRNAs
title_short Identification and Analysis of Human Sex-biased MicroRNAs
title_sort identification and analysis of human sex-biased micrornas
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6076379/
https://www.ncbi.nlm.nih.gov/pubmed/30005964
http://dx.doi.org/10.1016/j.gpb.2018.03.004
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