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Evidence for a Large Expansion and Subfunctionalization of Globin Genes in Sea Anemones

The globin gene superfamily has been well-characterized in vertebrates, however, there has been limited research in early-diverging lineages, such as phylum Cnidaria. This study aimed to identify globin genes in multiple cnidarian lineages, and use bioinformatic approaches to characterize the evolut...

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Autores principales: Smith, Hayden L, Pavasovic, Ana, Surm, Joachim M, Phillips, Matthew J, Prentis, Peter J
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6077788/
https://www.ncbi.nlm.nih.gov/pubmed/29947797
http://dx.doi.org/10.1093/gbe/evy128
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author Smith, Hayden L
Pavasovic, Ana
Surm, Joachim M
Phillips, Matthew J
Prentis, Peter J
author_facet Smith, Hayden L
Pavasovic, Ana
Surm, Joachim M
Phillips, Matthew J
Prentis, Peter J
author_sort Smith, Hayden L
collection PubMed
description The globin gene superfamily has been well-characterized in vertebrates, however, there has been limited research in early-diverging lineages, such as phylum Cnidaria. This study aimed to identify globin genes in multiple cnidarian lineages, and use bioinformatic approaches to characterize the evolution, structure, and expression of these genes. Phylogenetic analyses and in silico protein predictions showed that all cnidarians have undergone an expansion of globin genes, which likely have a hexacoordinate protein structure. Our protein modeling has also revealed the possibility of a single pentacoordinate globin lineage in anthozoan species. Some cnidarian globin genes displayed tissue and development specific expression with very few orthologous genes similarly expressed across species. Our phylogenetic analyses also revealed that eumetazoan globin genes form a polyphyletic relationship with vertebrate globin genes. Overall, our analyses suggest that a Ngb-like and GbX-like gene were most likely present in the globin gene repertoire for the last common ancestor of eumetazoans. The identification of a large-scale expansion and subfunctionalization of globin genes in actiniarians provides an excellent starting point to further our understanding of the evolution and function of the globin gene superfamily in early-diverging lineages.
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spelling pubmed-60777882018-08-09 Evidence for a Large Expansion and Subfunctionalization of Globin Genes in Sea Anemones Smith, Hayden L Pavasovic, Ana Surm, Joachim M Phillips, Matthew J Prentis, Peter J Genome Biol Evol Research Article The globin gene superfamily has been well-characterized in vertebrates, however, there has been limited research in early-diverging lineages, such as phylum Cnidaria. This study aimed to identify globin genes in multiple cnidarian lineages, and use bioinformatic approaches to characterize the evolution, structure, and expression of these genes. Phylogenetic analyses and in silico protein predictions showed that all cnidarians have undergone an expansion of globin genes, which likely have a hexacoordinate protein structure. Our protein modeling has also revealed the possibility of a single pentacoordinate globin lineage in anthozoan species. Some cnidarian globin genes displayed tissue and development specific expression with very few orthologous genes similarly expressed across species. Our phylogenetic analyses also revealed that eumetazoan globin genes form a polyphyletic relationship with vertebrate globin genes. Overall, our analyses suggest that a Ngb-like and GbX-like gene were most likely present in the globin gene repertoire for the last common ancestor of eumetazoans. The identification of a large-scale expansion and subfunctionalization of globin genes in actiniarians provides an excellent starting point to further our understanding of the evolution and function of the globin gene superfamily in early-diverging lineages. Oxford University Press 2018-06-27 /pmc/articles/PMC6077788/ /pubmed/29947797 http://dx.doi.org/10.1093/gbe/evy128 Text en © The Author(s) 2018. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Smith, Hayden L
Pavasovic, Ana
Surm, Joachim M
Phillips, Matthew J
Prentis, Peter J
Evidence for a Large Expansion and Subfunctionalization of Globin Genes in Sea Anemones
title Evidence for a Large Expansion and Subfunctionalization of Globin Genes in Sea Anemones
title_full Evidence for a Large Expansion and Subfunctionalization of Globin Genes in Sea Anemones
title_fullStr Evidence for a Large Expansion and Subfunctionalization of Globin Genes in Sea Anemones
title_full_unstemmed Evidence for a Large Expansion and Subfunctionalization of Globin Genes in Sea Anemones
title_short Evidence for a Large Expansion and Subfunctionalization of Globin Genes in Sea Anemones
title_sort evidence for a large expansion and subfunctionalization of globin genes in sea anemones
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6077788/
https://www.ncbi.nlm.nih.gov/pubmed/29947797
http://dx.doi.org/10.1093/gbe/evy128
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