Cargando…

Intrinsic Dynamic Nature of Neutral Hydrogen Bonds Elucidated with QTAIM Dual Functional Analysis: Role of the Compliance Force Constants and QTAIM‐DFA Parameters in Stability

The dynamic and static nature of various neutral hydrogen bonds (nHBs) is elucidated with quantum theory of atoms‐in‐molecules dual functional analysis (QTAIM‐DFA). The perturbed structures generated by using the coordinates derived from the compliance force constants (C(ij)) of internal vibrations...

Descripción completa

Detalles Bibliográficos
Autores principales: Nishide, Taro, Hayashi, Satoko, Nakanishi, Waro
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6077874/
https://www.ncbi.nlm.nih.gov/pubmed/30094124
http://dx.doi.org/10.1002/open.201800051
_version_ 1783344992664682496
author Nishide, Taro
Hayashi, Satoko
Nakanishi, Waro
author_facet Nishide, Taro
Hayashi, Satoko
Nakanishi, Waro
author_sort Nishide, Taro
collection PubMed
description The dynamic and static nature of various neutral hydrogen bonds (nHBs) is elucidated with quantum theory of atoms‐in‐molecules dual functional analysis (QTAIM‐DFA). The perturbed structures generated by using the coordinates derived from the compliance force constants (C(ij)) of internal vibrations are employed for QTAIM‐DFA. The method is called CIV. The dynamic nature of CIV is described as the “intrinsic dynamic nature”, as the coordinates are invariant to the choice of the coordinate system. nHBs are, for example, predicted to be van der Waals (H(2)Se−✶−HSeH; ✶=bond critical point), t‐HB(nc) (typical‐HBs with no covalency: HI−✶−HI), t‐HB(wc) (t‐HBs with covalency: H(2)C=O−✶−HI), CT‐MC [molecular complex formation through charge transfer (CT): H(2)C=O−✶−HF], and CT‐TBP (trigonal bipyramidal adduct formation through CT: H(3)N−✶−HI) in nature. The results with CIV were the same as those with POM in the calculation errors, for which the perturbed structures were generated by partial optimization, and the interaction distances in question were fixed suitably in POM. The highly excellent applicability of CIV for QTAIM‐DFA was demonstrated for the various nHBs, as well as for the standard interactions previously reported. The stability of the HBs, evaluated by ΔE, is well correlated with C(ij) (ΔE×C(ij)=constant value of −165.64), and the QTAIM parameters, although a few deviations were detected.
format Online
Article
Text
id pubmed-6077874
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-60778742018-08-09 Intrinsic Dynamic Nature of Neutral Hydrogen Bonds Elucidated with QTAIM Dual Functional Analysis: Role of the Compliance Force Constants and QTAIM‐DFA Parameters in Stability Nishide, Taro Hayashi, Satoko Nakanishi, Waro ChemistryOpen Full Papers The dynamic and static nature of various neutral hydrogen bonds (nHBs) is elucidated with quantum theory of atoms‐in‐molecules dual functional analysis (QTAIM‐DFA). The perturbed structures generated by using the coordinates derived from the compliance force constants (C(ij)) of internal vibrations are employed for QTAIM‐DFA. The method is called CIV. The dynamic nature of CIV is described as the “intrinsic dynamic nature”, as the coordinates are invariant to the choice of the coordinate system. nHBs are, for example, predicted to be van der Waals (H(2)Se−✶−HSeH; ✶=bond critical point), t‐HB(nc) (typical‐HBs with no covalency: HI−✶−HI), t‐HB(wc) (t‐HBs with covalency: H(2)C=O−✶−HI), CT‐MC [molecular complex formation through charge transfer (CT): H(2)C=O−✶−HF], and CT‐TBP (trigonal bipyramidal adduct formation through CT: H(3)N−✶−HI) in nature. The results with CIV were the same as those with POM in the calculation errors, for which the perturbed structures were generated by partial optimization, and the interaction distances in question were fixed suitably in POM. The highly excellent applicability of CIV for QTAIM‐DFA was demonstrated for the various nHBs, as well as for the standard interactions previously reported. The stability of the HBs, evaluated by ΔE, is well correlated with C(ij) (ΔE×C(ij)=constant value of −165.64), and the QTAIM parameters, although a few deviations were detected. John Wiley and Sons Inc. 2018-06-06 /pmc/articles/PMC6077874/ /pubmed/30094124 http://dx.doi.org/10.1002/open.201800051 Text en © 2018 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA. This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Full Papers
Nishide, Taro
Hayashi, Satoko
Nakanishi, Waro
Intrinsic Dynamic Nature of Neutral Hydrogen Bonds Elucidated with QTAIM Dual Functional Analysis: Role of the Compliance Force Constants and QTAIM‐DFA Parameters in Stability
title Intrinsic Dynamic Nature of Neutral Hydrogen Bonds Elucidated with QTAIM Dual Functional Analysis: Role of the Compliance Force Constants and QTAIM‐DFA Parameters in Stability
title_full Intrinsic Dynamic Nature of Neutral Hydrogen Bonds Elucidated with QTAIM Dual Functional Analysis: Role of the Compliance Force Constants and QTAIM‐DFA Parameters in Stability
title_fullStr Intrinsic Dynamic Nature of Neutral Hydrogen Bonds Elucidated with QTAIM Dual Functional Analysis: Role of the Compliance Force Constants and QTAIM‐DFA Parameters in Stability
title_full_unstemmed Intrinsic Dynamic Nature of Neutral Hydrogen Bonds Elucidated with QTAIM Dual Functional Analysis: Role of the Compliance Force Constants and QTAIM‐DFA Parameters in Stability
title_short Intrinsic Dynamic Nature of Neutral Hydrogen Bonds Elucidated with QTAIM Dual Functional Analysis: Role of the Compliance Force Constants and QTAIM‐DFA Parameters in Stability
title_sort intrinsic dynamic nature of neutral hydrogen bonds elucidated with qtaim dual functional analysis: role of the compliance force constants and qtaim‐dfa parameters in stability
topic Full Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6077874/
https://www.ncbi.nlm.nih.gov/pubmed/30094124
http://dx.doi.org/10.1002/open.201800051
work_keys_str_mv AT nishidetaro intrinsicdynamicnatureofneutralhydrogenbondselucidatedwithqtaimdualfunctionalanalysisroleofthecomplianceforceconstantsandqtaimdfaparametersinstability
AT hayashisatoko intrinsicdynamicnatureofneutralhydrogenbondselucidatedwithqtaimdualfunctionalanalysisroleofthecomplianceforceconstantsandqtaimdfaparametersinstability
AT nakanishiwaro intrinsicdynamicnatureofneutralhydrogenbondselucidatedwithqtaimdualfunctionalanalysisroleofthecomplianceforceconstantsandqtaimdfaparametersinstability