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Network Architecture and Mutational Sensitivity of the C. elegans Metabolome

A fundamental issue in evolutionary systems biology is understanding the relationship between the topological architecture of a biological network, such as a metabolic network, and the evolution of the network. The rate at which an element in a metabolic network accumulates genetic variation via new...

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Autores principales: Johnson, Lindsay M., Chandler, Luke M., Davies, Sarah K., Baer, Charles F.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6079199/
https://www.ncbi.nlm.nih.gov/pubmed/30109234
http://dx.doi.org/10.3389/fmolb.2018.00069
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author Johnson, Lindsay M.
Chandler, Luke M.
Davies, Sarah K.
Baer, Charles F.
author_facet Johnson, Lindsay M.
Chandler, Luke M.
Davies, Sarah K.
Baer, Charles F.
author_sort Johnson, Lindsay M.
collection PubMed
description A fundamental issue in evolutionary systems biology is understanding the relationship between the topological architecture of a biological network, such as a metabolic network, and the evolution of the network. The rate at which an element in a metabolic network accumulates genetic variation via new mutations depends on both the size of the mutational target it presents and its robustness to mutational perturbation. Quantifying the relationship between topological properties of network elements and the mutability of those elements will facilitate understanding the variation in and evolution of networks at the level of populations and higher taxa. We report an investigation into the relationship between two topological properties of 29 metabolites in the C. elegans metabolic network and the sensitivity of those metabolites to the cumulative effects of spontaneous mutation. The correlations between measures of network centrality and mutability are not statistically significant, but several trends point toward a weak positive association between network centrality and mutational sensitivity. There is a small but significant negative association between the mutational correlation of a pair of metabolites (r(M)) and the shortest path length between those metabolites. Positive association between the centrality of a metabolite and its mutational heritability is consistent with centrally-positioned metabolites presenting a larger mutational target than peripheral ones, and is inconsistent with centrality conferring mutational robustness, at least in toto. The weakness of the correlation between r(M) and the shortest path length between pairs of metabolites suggests that network locality is an important but not overwhelming factor governing mutational pleiotropy. These findings provide necessary background against which the effects of other evolutionary forces, most importantly natural selection, can be interpreted.
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spelling pubmed-60791992018-08-14 Network Architecture and Mutational Sensitivity of the C. elegans Metabolome Johnson, Lindsay M. Chandler, Luke M. Davies, Sarah K. Baer, Charles F. Front Mol Biosci Molecular Biosciences A fundamental issue in evolutionary systems biology is understanding the relationship between the topological architecture of a biological network, such as a metabolic network, and the evolution of the network. The rate at which an element in a metabolic network accumulates genetic variation via new mutations depends on both the size of the mutational target it presents and its robustness to mutational perturbation. Quantifying the relationship between topological properties of network elements and the mutability of those elements will facilitate understanding the variation in and evolution of networks at the level of populations and higher taxa. We report an investigation into the relationship between two topological properties of 29 metabolites in the C. elegans metabolic network and the sensitivity of those metabolites to the cumulative effects of spontaneous mutation. The correlations between measures of network centrality and mutability are not statistically significant, but several trends point toward a weak positive association between network centrality and mutational sensitivity. There is a small but significant negative association between the mutational correlation of a pair of metabolites (r(M)) and the shortest path length between those metabolites. Positive association between the centrality of a metabolite and its mutational heritability is consistent with centrally-positioned metabolites presenting a larger mutational target than peripheral ones, and is inconsistent with centrality conferring mutational robustness, at least in toto. The weakness of the correlation between r(M) and the shortest path length between pairs of metabolites suggests that network locality is an important but not overwhelming factor governing mutational pleiotropy. These findings provide necessary background against which the effects of other evolutionary forces, most importantly natural selection, can be interpreted. Frontiers Media S.A. 2018-07-31 /pmc/articles/PMC6079199/ /pubmed/30109234 http://dx.doi.org/10.3389/fmolb.2018.00069 Text en Copyright © 2018 Johnson, Chandler, Davies and Baer. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Molecular Biosciences
Johnson, Lindsay M.
Chandler, Luke M.
Davies, Sarah K.
Baer, Charles F.
Network Architecture and Mutational Sensitivity of the C. elegans Metabolome
title Network Architecture and Mutational Sensitivity of the C. elegans Metabolome
title_full Network Architecture and Mutational Sensitivity of the C. elegans Metabolome
title_fullStr Network Architecture and Mutational Sensitivity of the C. elegans Metabolome
title_full_unstemmed Network Architecture and Mutational Sensitivity of the C. elegans Metabolome
title_short Network Architecture and Mutational Sensitivity of the C. elegans Metabolome
title_sort network architecture and mutational sensitivity of the c. elegans metabolome
topic Molecular Biosciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6079199/
https://www.ncbi.nlm.nih.gov/pubmed/30109234
http://dx.doi.org/10.3389/fmolb.2018.00069
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