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NorWood: a gene expression resource for evo‐devo studies of conifer wood development

The secondary xylem of conifers is composed mainly of tracheids that differ anatomically and chemically from angiosperm xylem cells. There is currently no high‐spatial‐resolution data available profiling gene expression during wood formation for any coniferous species, which limits insight into trac...

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Autores principales: Jokipii‐Lukkari, Soile, Sundell, David, Nilsson, Ove, Hvidsten, Torgeir R., Street, Nathaniel R., Tuominen, Hannele
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6079643/
https://www.ncbi.nlm.nih.gov/pubmed/28186632
http://dx.doi.org/10.1111/nph.14458
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author Jokipii‐Lukkari, Soile
Sundell, David
Nilsson, Ove
Hvidsten, Torgeir R.
Street, Nathaniel R.
Tuominen, Hannele
author_facet Jokipii‐Lukkari, Soile
Sundell, David
Nilsson, Ove
Hvidsten, Torgeir R.
Street, Nathaniel R.
Tuominen, Hannele
author_sort Jokipii‐Lukkari, Soile
collection PubMed
description The secondary xylem of conifers is composed mainly of tracheids that differ anatomically and chemically from angiosperm xylem cells. There is currently no high‐spatial‐resolution data available profiling gene expression during wood formation for any coniferous species, which limits insight into tracheid development. RNA‐sequencing data from replicated, high‐spatial‐resolution section series throughout the cambial and woody tissues of Picea abies were used to generate the NorWood.conGenIE.org web resource, which facilitates exploration of the associated gene expression profiles and co‐expression networks. Integration within PlantGenIE.org enabled a comparative regulomics analysis, revealing divergent co‐expression networks between P. abies and the two angiosperm species Arabidopsis thaliana and Populus tremula for the secondary cell wall (SCW) master regulator NAC Class IIB transcription factors. The SCW cellulose synthase genes (CesAs) were located in the neighbourhoods of the NAC factors in A. thaliana and P. tremula, but not in P. abies. The NorWood co‐expression network enabled identification of potential SCW CesA regulators in P. abies. The NorWood web resource represents a powerful community tool for generating evo‐devo insights into the divergence of wood formation between angiosperms and gymnosperms and for advancing understanding of the regulation of wood development in P. abies.
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spelling pubmed-60796432018-08-09 NorWood: a gene expression resource for evo‐devo studies of conifer wood development Jokipii‐Lukkari, Soile Sundell, David Nilsson, Ove Hvidsten, Torgeir R. Street, Nathaniel R. Tuominen, Hannele New Phytol Research The secondary xylem of conifers is composed mainly of tracheids that differ anatomically and chemically from angiosperm xylem cells. There is currently no high‐spatial‐resolution data available profiling gene expression during wood formation for any coniferous species, which limits insight into tracheid development. RNA‐sequencing data from replicated, high‐spatial‐resolution section series throughout the cambial and woody tissues of Picea abies were used to generate the NorWood.conGenIE.org web resource, which facilitates exploration of the associated gene expression profiles and co‐expression networks. Integration within PlantGenIE.org enabled a comparative regulomics analysis, revealing divergent co‐expression networks between P. abies and the two angiosperm species Arabidopsis thaliana and Populus tremula for the secondary cell wall (SCW) master regulator NAC Class IIB transcription factors. The SCW cellulose synthase genes (CesAs) were located in the neighbourhoods of the NAC factors in A. thaliana and P. tremula, but not in P. abies. The NorWood co‐expression network enabled identification of potential SCW CesA regulators in P. abies. The NorWood web resource represents a powerful community tool for generating evo‐devo insights into the divergence of wood formation between angiosperms and gymnosperms and for advancing understanding of the regulation of wood development in P. abies. John Wiley and Sons Inc. 2017-02-10 2017-10 /pmc/articles/PMC6079643/ /pubmed/28186632 http://dx.doi.org/10.1111/nph.14458 Text en © 2017 The Authors. New Phytologist © 2017 New Phytologist Trust This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research
Jokipii‐Lukkari, Soile
Sundell, David
Nilsson, Ove
Hvidsten, Torgeir R.
Street, Nathaniel R.
Tuominen, Hannele
NorWood: a gene expression resource for evo‐devo studies of conifer wood development
title NorWood: a gene expression resource for evo‐devo studies of conifer wood development
title_full NorWood: a gene expression resource for evo‐devo studies of conifer wood development
title_fullStr NorWood: a gene expression resource for evo‐devo studies of conifer wood development
title_full_unstemmed NorWood: a gene expression resource for evo‐devo studies of conifer wood development
title_short NorWood: a gene expression resource for evo‐devo studies of conifer wood development
title_sort norwood: a gene expression resource for evo‐devo studies of conifer wood development
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6079643/
https://www.ncbi.nlm.nih.gov/pubmed/28186632
http://dx.doi.org/10.1111/nph.14458
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