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NorWood: a gene expression resource for evo‐devo studies of conifer wood development
The secondary xylem of conifers is composed mainly of tracheids that differ anatomically and chemically from angiosperm xylem cells. There is currently no high‐spatial‐resolution data available profiling gene expression during wood formation for any coniferous species, which limits insight into trac...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6079643/ https://www.ncbi.nlm.nih.gov/pubmed/28186632 http://dx.doi.org/10.1111/nph.14458 |
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author | Jokipii‐Lukkari, Soile Sundell, David Nilsson, Ove Hvidsten, Torgeir R. Street, Nathaniel R. Tuominen, Hannele |
author_facet | Jokipii‐Lukkari, Soile Sundell, David Nilsson, Ove Hvidsten, Torgeir R. Street, Nathaniel R. Tuominen, Hannele |
author_sort | Jokipii‐Lukkari, Soile |
collection | PubMed |
description | The secondary xylem of conifers is composed mainly of tracheids that differ anatomically and chemically from angiosperm xylem cells. There is currently no high‐spatial‐resolution data available profiling gene expression during wood formation for any coniferous species, which limits insight into tracheid development. RNA‐sequencing data from replicated, high‐spatial‐resolution section series throughout the cambial and woody tissues of Picea abies were used to generate the NorWood.conGenIE.org web resource, which facilitates exploration of the associated gene expression profiles and co‐expression networks. Integration within PlantGenIE.org enabled a comparative regulomics analysis, revealing divergent co‐expression networks between P. abies and the two angiosperm species Arabidopsis thaliana and Populus tremula for the secondary cell wall (SCW) master regulator NAC Class IIB transcription factors. The SCW cellulose synthase genes (CesAs) were located in the neighbourhoods of the NAC factors in A. thaliana and P. tremula, but not in P. abies. The NorWood co‐expression network enabled identification of potential SCW CesA regulators in P. abies. The NorWood web resource represents a powerful community tool for generating evo‐devo insights into the divergence of wood formation between angiosperms and gymnosperms and for advancing understanding of the regulation of wood development in P. abies. |
format | Online Article Text |
id | pubmed-6079643 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-60796432018-08-09 NorWood: a gene expression resource for evo‐devo studies of conifer wood development Jokipii‐Lukkari, Soile Sundell, David Nilsson, Ove Hvidsten, Torgeir R. Street, Nathaniel R. Tuominen, Hannele New Phytol Research The secondary xylem of conifers is composed mainly of tracheids that differ anatomically and chemically from angiosperm xylem cells. There is currently no high‐spatial‐resolution data available profiling gene expression during wood formation for any coniferous species, which limits insight into tracheid development. RNA‐sequencing data from replicated, high‐spatial‐resolution section series throughout the cambial and woody tissues of Picea abies were used to generate the NorWood.conGenIE.org web resource, which facilitates exploration of the associated gene expression profiles and co‐expression networks. Integration within PlantGenIE.org enabled a comparative regulomics analysis, revealing divergent co‐expression networks between P. abies and the two angiosperm species Arabidopsis thaliana and Populus tremula for the secondary cell wall (SCW) master regulator NAC Class IIB transcription factors. The SCW cellulose synthase genes (CesAs) were located in the neighbourhoods of the NAC factors in A. thaliana and P. tremula, but not in P. abies. The NorWood co‐expression network enabled identification of potential SCW CesA regulators in P. abies. The NorWood web resource represents a powerful community tool for generating evo‐devo insights into the divergence of wood formation between angiosperms and gymnosperms and for advancing understanding of the regulation of wood development in P. abies. John Wiley and Sons Inc. 2017-02-10 2017-10 /pmc/articles/PMC6079643/ /pubmed/28186632 http://dx.doi.org/10.1111/nph.14458 Text en © 2017 The Authors. New Phytologist © 2017 New Phytologist Trust This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Jokipii‐Lukkari, Soile Sundell, David Nilsson, Ove Hvidsten, Torgeir R. Street, Nathaniel R. Tuominen, Hannele NorWood: a gene expression resource for evo‐devo studies of conifer wood development |
title | NorWood: a gene expression resource for evo‐devo studies of conifer wood development |
title_full | NorWood: a gene expression resource for evo‐devo studies of conifer wood development |
title_fullStr | NorWood: a gene expression resource for evo‐devo studies of conifer wood development |
title_full_unstemmed | NorWood: a gene expression resource for evo‐devo studies of conifer wood development |
title_short | NorWood: a gene expression resource for evo‐devo studies of conifer wood development |
title_sort | norwood: a gene expression resource for evo‐devo studies of conifer wood development |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6079643/ https://www.ncbi.nlm.nih.gov/pubmed/28186632 http://dx.doi.org/10.1111/nph.14458 |
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