Cargando…

Weighted single-step GWAS and gene network analysis reveal new candidate genes for semen traits in pigs

BACKGROUND: In recent years, there has been increased interest in the study of the molecular processes that affect semen traits. In this study, our aim was to identify quantitative trait loci (QTL) regions associated with four semen traits (motility, progressive motility, number of sperm cells per e...

Descripción completa

Detalles Bibliográficos
Autores principales:	Marques, Daniele B. D., Bastiaansen, John W. M., Broekhuijse, Marleen L. W. J., Lopes, Marcos S., Knol, Egbert F., Harlizius, Barbara, Guimarães, Simone E. F., Silva, Fabyano F., Lopes, Paulo S.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2018
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6080523/ https://www.ncbi.nlm.nih.gov/pubmed/30081822 http://dx.doi.org/10.1186/s12711-018-0412-z

Ejemplares similares

Revealing new candidate genes for reproductive traits in pigs: combining Bayesian GWAS and functional pathways
por: Verardo, Lucas L., et al.
Publicado: (2016)

Linkage disequilibrium patterns and persistence of phase in purebred and crossbred pig (Sus scrofa) populations
por: Veroneze, Renata, et al.
Publicado: (2014)

Improved estimation of inbreeding and kinship in pigs using optimized SNP panels
por: Lopes, Marcos S, et al.
Publicado: (2013)

A Genome-Wide Association Study Reveals Dominance Effects on Number of Teats in Pigs
por: Lopes, Marcos S., et al.
Publicado: (2014)

Genome-wide association study using deregressed breeding values for cryptorchidism and scrotal/inguinal hernia in two pig lines
por: Sevillano, Claudia A, et al.
Publicado: (2015)

Identification of New Candidate Genes Related to Semen Traits in Duroc Pigs through Weighted Single-Step GWAS
por: Zhang, Xiaoke, et al.
Publicado: (2023)

A genome-wide association study on androstenone levels in pigs reveals a cluster of candidate genes on chromosome 6
por: Duijvesteijn, Naomi, et al.
Publicado: (2010)

Using short read sequencing to characterise balanced reciprocal translocations in pigs
por: Bouwman, Aniek C., et al.
Publicado: (2020)

Weighted single-step GWAS identified candidate genes associated with semen traits in a Duroc boar population
por: Gao, Ning, et al.
Publicado: (2019)

High-resolution association mapping of number of teats in pigs reveals regions controlling vertebral development
por: Duijvesteijn, Naomi, et al.
Publicado: (2014)

Evaluation of the phenotypic and genomic background of variability based on litter size of Large White pigs
por: Sell-Kubiak, Ewa, et al.
Publicado: (2022)

Estimation of Additive, Dominance, and Imprinting Genetic Variance Using Genomic Data
por: Lopes, Marcos S., et al.
Publicado: (2015)

Accuracy of Predicted Genomic Breeding Values in Purebred and Crossbred Pigs
por: Hidalgo, André M., et al.
Publicado: (2015)

Multi-Trait GWAS and New Candidate Genes Annotation for Growth Curve Parameters in Brahman Cattle
por: Crispim, Aline Camporez, et al.
Publicado: (2015)

Weighted Single-Step GWAS Identified Candidate Genes Associated with Growth Traits in a Duroc Pig Population
por: Ruan, Donglin, et al.
Publicado: (2021)

Investigating pig survival in different production phases using genomic models
por: Leite, Natália Galoro, et al.
Publicado: (2021)

Fine mapping and single nucleotide polymorphism effects estimation on pig chromosomes 1, 4, 7, 8, 17 and X
por: Hidalgo, André M., et al.
Publicado: (2013)

Identification of Candidate Genes for Economically Important Carcass Cutting in Commercial Pigs through GWAS
por: Zhou, Fuchen, et al.
Publicado: (2023)

Relationship Between the Estimated Breeding Values for Litter Traits at Birth and Ovarian and Embryonic Traits and Their Additive Genetic Variance in Gilts at 35 Days of Pregnancy
por: Da Silva, Carolina L. A., et al.
Publicado: (2018)

Genomic selection for crossbred performance accounting for breed-specific effects
por: Lopes, Marcos S., et al.
Publicado: (2017)

Loss of function mutations in essential genes cause embryonic lethality in pigs
por: Derks, Martijn F. L., et al.
Publicado: (2019)

Detection of a Frameshift Deletion in the SPTBN4 Gene Leads to Prevention of Severe Myopathy and Postnatal Mortality in Pigs
por: Derks, Martijn F. L., et al.
Publicado: (2019)

Unifying Candidate Gene and GWAS Approaches in Asthma
por: Michel, Sven, et al.
Publicado: (2010)

GWAS identifies candidate genes controlling adventitious rooting in Populus trichocarpa
por: Nagle, Michael F, et al.
Publicado: (2023)

A systematic survey to identify lethal recessive variation in highly managed pig populations
por: Derks, Martijn F. L., et al.
Publicado: (2017)

An Integrative Analysis of Transcriptome and GWAS Data to Identify Potential Candidate Genes Influencing Meat Quality Traits in Pigs
por: Liu, Xianxian, et al.
Publicado: (2021)

GWAS and Post-GWAS High-Resolution Mapping Analyses Identify Strong Novel Candidate Genes Influencing the Fatty Acid Composition of the Longissimus dorsi Muscle in Pigs
por: Lee, Jae-Bong, et al.
Publicado: (2021)

Weighted single-step GWAS and RNA sequencing reveals key candidate genes associated with physiological indicators of heat stress in Holstein cattle
por: Luo, Hanpeng, et al.
Publicado: (2022)

Post-GWAS screening of candidate genes for refractive error in mutant zebrafish models
por: Quint, Wim H., et al.
Publicado: (2023)

Integration of liver gene co-expression networks and eGWAs analyses highlighted candidate regulators implicated in lipid metabolism in pigs
por: Ballester, Maria, et al.
Publicado: (2017)

QTLs and Candidate Genes Associated with Semen Traits in Merino Sheep
por: Hodge, Marnie J., et al.
Publicado: (2023)

A candidate gene analysis and GWAS for genes associated with maternal nondisjunction of chromosome 21
por: Chernus, Jonathan M., et al.
Publicado: (2019)

Genetic basis and identification of candidate genes for salt tolerance in rice by GWAS
por: Yuan, Jie, et al.
Publicado: (2020)

Deep resequencing identifies candidate functional genes in leprosy GWAS loci
por: Fava, Vinicius M., et al.
Publicado: (2021)

Comparing Alternative Single-Step GBLUP Approaches and Training Population Designs for Genomic Evaluation of Crossbred Animals
por: Alvarenga, Amanda B., et al.
Publicado: (2020)

Genomic growth curves of an outbred pig population
por: Silva, Fabyano Fonseca e, et al.
Publicado: (2013)

Candidate Genes in Bull Semen Production Traits: An Information Approach Review
por: Modiba, Mamokoma Cathrine, et al.
Publicado: (2022)

QTL mapping and GWAS reveal candidate genes controlling capsaicinoid content in Capsicum
por: Han, Koeun, et al.
Publicado: (2018)

Genetic architecture and candidate gene identification for grain size in bread wheat by GWAS
por: Yu, Haitao, et al.
Publicado: (2022)

Integrating GWAS and transcriptomics to identify candidate genes conferring heat tolerance in rice
por: Li, Pingping, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_2eahke334v4u7jks96jsifm1me