Cargando…

Methylation-level inferences and detection of differential methylation with MeDIP-seq data

DNA methylation is an essential epigenetic modification involved in regulating the expression of mammalian genomes. A variety of experimental approaches to generate genome-wide or whole-genome DNA methylation data have emerged in recent years. Methylated DNA immunoprecipitation followed by sequencin...

Descripción completa

Detalles Bibliográficos
Autores principales:	Zhou, Yan, Zhu, Jiadi, Zhao, Mingtao, Zhang, Baoxue, Jiang, Chunfu, Yang, Xiyan
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2018
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6080771/ https://www.ncbi.nlm.nih.gov/pubmed/30086146 http://dx.doi.org/10.1371/journal.pone.0201586

Ejemplares similares

DISMISS: detection of stranded methylation in MeDIP-Seq data
por: Niazi, Umar, et al.
Publicado: (2016)

Epigenetic alterations in TRAMP mice: epigenome DNA methylation profiling using MeDIP-seq
por: Li, Wenji, et al.
Publicado: (2018)

Genome-Wide Analysis of DNA Methylation before-and after Exercise in the Thoroughbred Horse with MeDIP-Seq
por: Gim, Jeong-An, et al.
Publicado: (2015)

Genome-wide DNA methylation profiling with MeDIP-seq using archived dried blood spots
por: Staunstrup, Nicklas H., et al.
Publicado: (2016)

Genome-wide DNA methylation analysis of breast cancer MCF-7 / Taxol cells with MeDIP-Seq
por: Shi, Ying, et al.
Publicado: (2020)

Whole-genome fetal and maternal DNA methylation analysis using MeDIP-NGS for the identification of differentially methylated regions
por: KERAVNOU, ANNA, et al.
Publicado: (2016)

Assessing the efficiency and significance of Methylated DNA Immunoprecipitation (MeDIP) assays in using in vitro methylated genomic DNA
por: Jia, Jinsong, et al.
Publicado: (2010)

Genome-wide analysis of cell-Free DNA methylation profiling with MeDIP-seq identified potential biomarkers for colorectal cancer
por: Zhang, Xin, et al.
Publicado: (2022)

Global analysis of DNA methylation in young (J1) and senescent (J2) Gossypium hirsutum L. cotyledons by MeDIP-Seq
por: Dou, Lingling, et al.
Publicado: (2017)

Analyses of methylomes of upland and lowland switchgrass (Panicum virgatum) ecotypes using MeDIP-seq and BS-seq
por: Dworkin, Mollee, et al.
Publicado: (2017)

A Comparison of the Whole Genome Approach of MeDIP-Seq to the Targeted Approach of the Infinium HumanMethylation450 BeadChip(®) for Methylome Profiling
por: Clark, Christine, et al.
Publicado: (2012)

Genome Wide MeDIP-Seq Profiling of Wild and Cultivated Olives Trees Suggests DNA Methylation Fingerprint on the Sensory Quality of Olive Oil
por: Badad, Oussama, et al.
Publicado: (2021)

Genome-wide CpG density and DNA methylation analysis method (MeDIP, RRBS, and WGBS) comparisons
por: Beck, Daniel, et al.
Publicado: (2021)

Generational comparisons (F1 versus F3) of vinclozolin induced epigenetic transgenerational inheritance of sperm differential DNA methylation regions (epimutations) using MeDIP-Seq
por: Beck, Daniel, et al.
Publicado: (2017)

MeDIP-seq and nCpG analyses illuminate sexually dimorphic methylation of gonadal development genes with high historic methylation in turtle hatchlings with temperature-dependent sex determination
por: Radhakrishnan, Srihari, et al.
Publicado: (2017)

Association of aberrant DNA methylation in Apc(min/+) mice with the epithelial-mesenchymal transition and Wnt/β-catenin pathways: genome-wide analysis using MeDIP-seq
por: Guo, Yue, et al.
Publicado: (2015)

MeSiC: A Model-Based Method for Estimating 5 mC Levels at Single-CpG Resolution from MeDIP-seq
por: Xiao, Yun, et al.
Publicado: (2015)

Genome-Wide Methylation Patterns in Androgen-Independent Prostate Cancer Cells: A Comprehensive Analysis Combining MeDIP-Bisulfite, RNA, and microRNA Sequencing Data
por: Wang, Yumin, et al.
Publicado: (2018)

A tripartite paternally methylated region within the Gpr1-Zdbf2 imprinted domain on mouse chromosome 1 identified by meDIP-on-chip
por: Hiura, Hitoshi, et al.
Publicado: (2010)

A tripartite paternally methylated region within the Gpr1-Zdbf2 imprinted domain on mouse chromosome 1 identified by meDIP-on-chip
por: Hiura, H., et al.
Publicado: (2014)

MeDIP Real-Time qPCR has the Potential for Noninvasive Prenatal Screening of Fetal Trisomy 21
por: Kazemi, Mohammad, et al.
Publicado: (2017)

MeDIP combined with in-solution targeted enrichment followed by NGS: Inter-individual methylation variability of fetal-specific biomarkers and their implementation in a proof of concept study for NIPT
por: Keravnou, Anna, et al.
Publicado: (2018)

Analyses of Methylomes Derived from Meso-American Common Bean (Phaseolus vulgaris L.) Using MeDIP-Seq and Whole Genome Sodium Bisulfite-Sequencing
por: Crampton, Mollee, et al.
Publicado: (2016)

AutoMeDIP-seq: A high-throughput, whole genome, DNA methylation assay
por: Butcher, Lee M., et al.
Publicado: (2010)

A new method for non-invasive prenatal diagnosis of Down syndrome using MeDIP real time qPCR
por: Patsalis, Philippos C.
Publicado: (2012)

GBS-MeDIP: A protocol for parallel identification of genetic and epigenetic variation in the same reduced fraction of genomes across individuals
por: Rezaei, Shiva, et al.
Publicado: (2022)

MEDIPIPE: an automated and comprehensive pipeline for cfMeDIP-seq data quality control and analysis
por: Zeng, Yong, et al.
Publicado: (2023)

Alterations of Epigenetic Signatures in Hepatocyte Nuclear Factor 4α Deficient Mouse Liver Determined by Improved ChIP-qPCR and (h)MeDIP-qPCR Assays
por: Zhang, Qinghao, et al.
Publicado: (2014)

Medipic 3 , X-ray
por: HORSWELL, Ian
Publicado: (2016)

Detection of differentially methylated regions from bisulfite-seq data by hidden Markov models incorporating genome-wide methylation level distributions
por: Saito, Yutaka, et al.
Publicado: (2015)

MeDEStrand: an improved method to infer genome-wide absolute methylation levels from DNA enrichment data
por: Xu, Jingting, et al.
Publicado: (2018)

Prediction model for malignant pulmonary nodules based on cfMeDIP‐seq and machine learning
por: Qi, Jian, et al.
Publicado: (2021)

DMRfinder: efficiently identifying differentially methylated regions from MethylC-seq data
por: Gaspar, John M., et al.
Publicado: (2017)

MEDIPS: genome-wide differential coverage analysis of sequencing data derived from DNA enrichment experiments
por: Lienhard, Matthias, et al.
Publicado: (2014)

A hierarchical model for clustering m(6)A methylation peaks in MeRIP-seq data
por: Cui, Xiaodong, et al.
Publicado: (2016)

An iteration normalization and test method for differential expression analysis of RNA-seq data
por: Zhou, Yan, et al.
Publicado: (2014)

EpiMethylTag: simultaneous detection of ATAC-seq or ChIP-seq signals with DNA methylation
por: Lhoumaud, Priscillia, et al.
Publicado: (2019)

BIMMER: a novel algorithm for detecting differential DNA methylation regions from MBDCap-seq data
por: Mao, Zijing, et al.
Publicado: (2014)

Erratum: An iteration normalization and test method for differential expression analysis of RNA-seq data
por: Zhou, Yan, et al.
Publicado: (2014)

An outbreak of cholera in Medipally village, Andhra Pradesh, India, 2013
por: Uthappa, Chengappa K., et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_ns3ue4bupbq082skrc3eoal9vl