Cargando…

Classification and Regression Tree Approach for Prediction of Potential Hazards of Urban Airborne Bacteria during Asian Dust Events

Despite progress in monitoring and modeling Asian dust (AD) events, real-time public hazard prediction based on biological evidence during AD events remains a challenge. Herein, both a classification and regression tree (CART) and multiple linear regression (MLR) were applied to assess the applicabi...

Descripción completa

Detalles Bibliográficos
Autores principales: Yoo, Keunje, Yoo, Hyunji, Lee, Jae Min, Shukla, Sudheer Kumar, Park, Joonhong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6081373/
https://www.ncbi.nlm.nih.gov/pubmed/30087362
http://dx.doi.org/10.1038/s41598-018-29796-7
_version_ 1783345634781167616
author Yoo, Keunje
Yoo, Hyunji
Lee, Jae Min
Shukla, Sudheer Kumar
Park, Joonhong
author_facet Yoo, Keunje
Yoo, Hyunji
Lee, Jae Min
Shukla, Sudheer Kumar
Park, Joonhong
author_sort Yoo, Keunje
collection PubMed
description Despite progress in monitoring and modeling Asian dust (AD) events, real-time public hazard prediction based on biological evidence during AD events remains a challenge. Herein, both a classification and regression tree (CART) and multiple linear regression (MLR) were applied to assess the applicability of prediction for potential urban airborne bacterial hazards during AD events using metagenomic analysis and real-time qPCR. In the present work, Bacillus cereus was screened as a potential pathogenic candidate and positively correlated with PM(10) concentration (p < 0.05). Additionally, detection of the bceT gene with qPCR, which codes for an enterotoxin in B. cereus, was significantly increased during AD events (p < 0.05). The CART approach more successfully predicted potential airborne bacterial hazards with a relatively high coefficient of determination (R(2)) and small bias, with the smallest root mean square error (RMSE) and mean absolute error (MAE) compared to the MLR approach. Regression tree analyses from the CART model showed that the PM(10) concentration, from 78.4 µg/m(3) to 92.2 µg/m(3), is an important atmospheric parameter that significantly affects the potential airborne bacterial hazard during AD events. The results show that the CART approach may be useful to effectively derive a predictive understanding of potential airborne bacterial hazards during AD events and thus has a possible for improving decision-making tools for environmental policies associated with air pollution and public health.
format Online
Article
Text
id pubmed-6081373
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-60813732018-08-10 Classification and Regression Tree Approach for Prediction of Potential Hazards of Urban Airborne Bacteria during Asian Dust Events Yoo, Keunje Yoo, Hyunji Lee, Jae Min Shukla, Sudheer Kumar Park, Joonhong Sci Rep Article Despite progress in monitoring and modeling Asian dust (AD) events, real-time public hazard prediction based on biological evidence during AD events remains a challenge. Herein, both a classification and regression tree (CART) and multiple linear regression (MLR) were applied to assess the applicability of prediction for potential urban airborne bacterial hazards during AD events using metagenomic analysis and real-time qPCR. In the present work, Bacillus cereus was screened as a potential pathogenic candidate and positively correlated with PM(10) concentration (p < 0.05). Additionally, detection of the bceT gene with qPCR, which codes for an enterotoxin in B. cereus, was significantly increased during AD events (p < 0.05). The CART approach more successfully predicted potential airborne bacterial hazards with a relatively high coefficient of determination (R(2)) and small bias, with the smallest root mean square error (RMSE) and mean absolute error (MAE) compared to the MLR approach. Regression tree analyses from the CART model showed that the PM(10) concentration, from 78.4 µg/m(3) to 92.2 µg/m(3), is an important atmospheric parameter that significantly affects the potential airborne bacterial hazard during AD events. The results show that the CART approach may be useful to effectively derive a predictive understanding of potential airborne bacterial hazards during AD events and thus has a possible for improving decision-making tools for environmental policies associated with air pollution and public health. Nature Publishing Group UK 2018-08-07 /pmc/articles/PMC6081373/ /pubmed/30087362 http://dx.doi.org/10.1038/s41598-018-29796-7 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Yoo, Keunje
Yoo, Hyunji
Lee, Jae Min
Shukla, Sudheer Kumar
Park, Joonhong
Classification and Regression Tree Approach for Prediction of Potential Hazards of Urban Airborne Bacteria during Asian Dust Events
title Classification and Regression Tree Approach for Prediction of Potential Hazards of Urban Airborne Bacteria during Asian Dust Events
title_full Classification and Regression Tree Approach for Prediction of Potential Hazards of Urban Airborne Bacteria during Asian Dust Events
title_fullStr Classification and Regression Tree Approach for Prediction of Potential Hazards of Urban Airborne Bacteria during Asian Dust Events
title_full_unstemmed Classification and Regression Tree Approach for Prediction of Potential Hazards of Urban Airborne Bacteria during Asian Dust Events
title_short Classification and Regression Tree Approach for Prediction of Potential Hazards of Urban Airborne Bacteria during Asian Dust Events
title_sort classification and regression tree approach for prediction of potential hazards of urban airborne bacteria during asian dust events
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6081373/
https://www.ncbi.nlm.nih.gov/pubmed/30087362
http://dx.doi.org/10.1038/s41598-018-29796-7
work_keys_str_mv AT yookeunje classificationandregressiontreeapproachforpredictionofpotentialhazardsofurbanairbornebacteriaduringasiandustevents
AT yoohyunji classificationandregressiontreeapproachforpredictionofpotentialhazardsofurbanairbornebacteriaduringasiandustevents
AT leejaemin classificationandregressiontreeapproachforpredictionofpotentialhazardsofurbanairbornebacteriaduringasiandustevents
AT shuklasudheerkumar classificationandregressiontreeapproachforpredictionofpotentialhazardsofurbanairbornebacteriaduringasiandustevents
AT parkjoonhong classificationandregressiontreeapproachforpredictionofpotentialhazardsofurbanairbornebacteriaduringasiandustevents