Cargando…

Temporal Segmentation for Capturing Snapshots of Patient Histories in Korean Clinical Narrative

OBJECTIVES: Clinical discharge summaries provide valuable information about patients' clinical history, which is helpful for the realization of intelligent healthcare applications. The documents tend to take the form of separate segments based on temporal or topical information. If a patient�...

Descripción completa

Detalles Bibliográficos
Autores principales: Lee, Wangjin, Choi, Jinwook
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Korean Society of Medical Informatics 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6085205/
https://www.ncbi.nlm.nih.gov/pubmed/30109151
http://dx.doi.org/10.4258/hir.2018.24.3.179
_version_ 1783346286574960640
author Lee, Wangjin
Choi, Jinwook
author_facet Lee, Wangjin
Choi, Jinwook
author_sort Lee, Wangjin
collection PubMed
description OBJECTIVES: Clinical discharge summaries provide valuable information about patients' clinical history, which is helpful for the realization of intelligent healthcare applications. The documents tend to take the form of separate segments based on temporal or topical information. If a patient's clinical history can be seen as a consecutive sequence of clinical events, then each temporal segment can be seen as a snapshot, providing a certain clinical context at a specific moment. This study aimed to demonstrate a temporal segmentation method of Korean clinical narratives for identifying textual snapshots of patient history as a proof-of-a-concept. METHODS: Our method uses pattern-based segmentation to approximate human recognition of the temporal or topical shifts in clinical documents. We utilized rheumatic patients' discharge summaries and transformed them into sequences of constituent chunks. We built 97 single pattern functions to denote whether a certain chunk has attributes that indicate that it can be a segment boundary. We manually defined the relationships between the pattern functions to resolve multiple pattern matchings and to make a final decision. RESULTS: The algorithm segmented 30 discharge summaries and processed 1,849 decision points. Three human judges were asked whether they agreed with the algorithm's prediction, and the agreement percentage on the judges' majority opinion was 89.61%. CONCLUSIONS: Although this method is based on manually constructed rules, our findings demonstrate that the proposed algorithm can achieve fairly good segmentation results, and it may be the basis for methodological improvement in the future.
format Online
Article
Text
id pubmed-6085205
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Korean Society of Medical Informatics
record_format MEDLINE/PubMed
spelling pubmed-60852052018-08-14 Temporal Segmentation for Capturing Snapshots of Patient Histories in Korean Clinical Narrative Lee, Wangjin Choi, Jinwook Healthc Inform Res Original Article OBJECTIVES: Clinical discharge summaries provide valuable information about patients' clinical history, which is helpful for the realization of intelligent healthcare applications. The documents tend to take the form of separate segments based on temporal or topical information. If a patient's clinical history can be seen as a consecutive sequence of clinical events, then each temporal segment can be seen as a snapshot, providing a certain clinical context at a specific moment. This study aimed to demonstrate a temporal segmentation method of Korean clinical narratives for identifying textual snapshots of patient history as a proof-of-a-concept. METHODS: Our method uses pattern-based segmentation to approximate human recognition of the temporal or topical shifts in clinical documents. We utilized rheumatic patients' discharge summaries and transformed them into sequences of constituent chunks. We built 97 single pattern functions to denote whether a certain chunk has attributes that indicate that it can be a segment boundary. We manually defined the relationships between the pattern functions to resolve multiple pattern matchings and to make a final decision. RESULTS: The algorithm segmented 30 discharge summaries and processed 1,849 decision points. Three human judges were asked whether they agreed with the algorithm's prediction, and the agreement percentage on the judges' majority opinion was 89.61%. CONCLUSIONS: Although this method is based on manually constructed rules, our findings demonstrate that the proposed algorithm can achieve fairly good segmentation results, and it may be the basis for methodological improvement in the future. Korean Society of Medical Informatics 2018-07 2018-07-31 /pmc/articles/PMC6085205/ /pubmed/30109151 http://dx.doi.org/10.4258/hir.2018.24.3.179 Text en © 2018 The Korean Society of Medical Informatics http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Lee, Wangjin
Choi, Jinwook
Temporal Segmentation for Capturing Snapshots of Patient Histories in Korean Clinical Narrative
title Temporal Segmentation for Capturing Snapshots of Patient Histories in Korean Clinical Narrative
title_full Temporal Segmentation for Capturing Snapshots of Patient Histories in Korean Clinical Narrative
title_fullStr Temporal Segmentation for Capturing Snapshots of Patient Histories in Korean Clinical Narrative
title_full_unstemmed Temporal Segmentation for Capturing Snapshots of Patient Histories in Korean Clinical Narrative
title_short Temporal Segmentation for Capturing Snapshots of Patient Histories in Korean Clinical Narrative
title_sort temporal segmentation for capturing snapshots of patient histories in korean clinical narrative
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6085205/
https://www.ncbi.nlm.nih.gov/pubmed/30109151
http://dx.doi.org/10.4258/hir.2018.24.3.179
work_keys_str_mv AT leewangjin temporalsegmentationforcapturingsnapshotsofpatienthistoriesinkoreanclinicalnarrative
AT choijinwook temporalsegmentationforcapturingsnapshotsofpatienthistoriesinkoreanclinicalnarrative