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Temporal Segmentation for Capturing Snapshots of Patient Histories in Korean Clinical Narrative
OBJECTIVES: Clinical discharge summaries provide valuable information about patients' clinical history, which is helpful for the realization of intelligent healthcare applications. The documents tend to take the form of separate segments based on temporal or topical information. If a patient...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Korean Society of Medical Informatics
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6085205/ https://www.ncbi.nlm.nih.gov/pubmed/30109151 http://dx.doi.org/10.4258/hir.2018.24.3.179 |
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author | Lee, Wangjin Choi, Jinwook |
author_facet | Lee, Wangjin Choi, Jinwook |
author_sort | Lee, Wangjin |
collection | PubMed |
description | OBJECTIVES: Clinical discharge summaries provide valuable information about patients' clinical history, which is helpful for the realization of intelligent healthcare applications. The documents tend to take the form of separate segments based on temporal or topical information. If a patient's clinical history can be seen as a consecutive sequence of clinical events, then each temporal segment can be seen as a snapshot, providing a certain clinical context at a specific moment. This study aimed to demonstrate a temporal segmentation method of Korean clinical narratives for identifying textual snapshots of patient history as a proof-of-a-concept. METHODS: Our method uses pattern-based segmentation to approximate human recognition of the temporal or topical shifts in clinical documents. We utilized rheumatic patients' discharge summaries and transformed them into sequences of constituent chunks. We built 97 single pattern functions to denote whether a certain chunk has attributes that indicate that it can be a segment boundary. We manually defined the relationships between the pattern functions to resolve multiple pattern matchings and to make a final decision. RESULTS: The algorithm segmented 30 discharge summaries and processed 1,849 decision points. Three human judges were asked whether they agreed with the algorithm's prediction, and the agreement percentage on the judges' majority opinion was 89.61%. CONCLUSIONS: Although this method is based on manually constructed rules, our findings demonstrate that the proposed algorithm can achieve fairly good segmentation results, and it may be the basis for methodological improvement in the future. |
format | Online Article Text |
id | pubmed-6085205 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Korean Society of Medical Informatics |
record_format | MEDLINE/PubMed |
spelling | pubmed-60852052018-08-14 Temporal Segmentation for Capturing Snapshots of Patient Histories in Korean Clinical Narrative Lee, Wangjin Choi, Jinwook Healthc Inform Res Original Article OBJECTIVES: Clinical discharge summaries provide valuable information about patients' clinical history, which is helpful for the realization of intelligent healthcare applications. The documents tend to take the form of separate segments based on temporal or topical information. If a patient's clinical history can be seen as a consecutive sequence of clinical events, then each temporal segment can be seen as a snapshot, providing a certain clinical context at a specific moment. This study aimed to demonstrate a temporal segmentation method of Korean clinical narratives for identifying textual snapshots of patient history as a proof-of-a-concept. METHODS: Our method uses pattern-based segmentation to approximate human recognition of the temporal or topical shifts in clinical documents. We utilized rheumatic patients' discharge summaries and transformed them into sequences of constituent chunks. We built 97 single pattern functions to denote whether a certain chunk has attributes that indicate that it can be a segment boundary. We manually defined the relationships between the pattern functions to resolve multiple pattern matchings and to make a final decision. RESULTS: The algorithm segmented 30 discharge summaries and processed 1,849 decision points. Three human judges were asked whether they agreed with the algorithm's prediction, and the agreement percentage on the judges' majority opinion was 89.61%. CONCLUSIONS: Although this method is based on manually constructed rules, our findings demonstrate that the proposed algorithm can achieve fairly good segmentation results, and it may be the basis for methodological improvement in the future. Korean Society of Medical Informatics 2018-07 2018-07-31 /pmc/articles/PMC6085205/ /pubmed/30109151 http://dx.doi.org/10.4258/hir.2018.24.3.179 Text en © 2018 The Korean Society of Medical Informatics http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Article Lee, Wangjin Choi, Jinwook Temporal Segmentation for Capturing Snapshots of Patient Histories in Korean Clinical Narrative |
title | Temporal Segmentation for Capturing Snapshots of Patient Histories in Korean Clinical Narrative |
title_full | Temporal Segmentation for Capturing Snapshots of Patient Histories in Korean Clinical Narrative |
title_fullStr | Temporal Segmentation for Capturing Snapshots of Patient Histories in Korean Clinical Narrative |
title_full_unstemmed | Temporal Segmentation for Capturing Snapshots of Patient Histories in Korean Clinical Narrative |
title_short | Temporal Segmentation for Capturing Snapshots of Patient Histories in Korean Clinical Narrative |
title_sort | temporal segmentation for capturing snapshots of patient histories in korean clinical narrative |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6085205/ https://www.ncbi.nlm.nih.gov/pubmed/30109151 http://dx.doi.org/10.4258/hir.2018.24.3.179 |
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