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CDEGenerator: an online platform to learn from existing data models to build model registries

OBJECTIVE: Best-practice data models harmonize semantics and data structure of medical variables in clinical or epidemiological studies. While there exist several published data sets, it remains challenging to find and reuse published eligibility criteria or other data items that match specific need...

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Autores principales: Varghese, Julian, Fujarski, Michael, Hegselmann, Stefan, Neuhaus, Philipp, Dugas, Martin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Dove Medical Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6089100/
https://www.ncbi.nlm.nih.gov/pubmed/30127646
http://dx.doi.org/10.2147/CLEP.S170075
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author Varghese, Julian
Fujarski, Michael
Hegselmann, Stefan
Neuhaus, Philipp
Dugas, Martin
author_facet Varghese, Julian
Fujarski, Michael
Hegselmann, Stefan
Neuhaus, Philipp
Dugas, Martin
author_sort Varghese, Julian
collection PubMed
description OBJECTIVE: Best-practice data models harmonize semantics and data structure of medical variables in clinical or epidemiological studies. While there exist several published data sets, it remains challenging to find and reuse published eligibility criteria or other data items that match specific needs of a newly planned study or registry. A novel Internet-based method for rapid comparison of published data models was implemented to enable reuse, customization, and harmonization of item catalogs for the early planning and development phase of research databases. METHODS: Based on prior work, a European information infrastructure with a large collection of medical data models was established. A newly developed analysis module called CDEGenerator provides systematic comparison of selected data models and user-tailored creation of minimum data sets or harmonized item catalogs. Usability was assessed by eight external medical documentation experts in a workshop by the umbrella organization for networked medical research in Germany with the System Usability Scale. RESULTS: The analysis and item-tailoring module provides multilingual comparisons of semantically complex eligibility criteria of clinical trials. The System Usability Scale yielded “good usability” (mean 75.0, range 65.0–92.5). User-tailored models can be exported to several data formats, such as XLS, REDCap or Operational Data Model by the Clinical Data Interchange Standards Consortium, which is supported by the US Food and Drug Administration and European Medicines Agency for metadata exchange of clinical studies. CONCLUSION: The online tool provides user-friendly methods to reuse, compare, and thus learn from data items of standardized or published models to design a blueprint for a harmonized research database.
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spelling pubmed-60891002018-08-20 CDEGenerator: an online platform to learn from existing data models to build model registries Varghese, Julian Fujarski, Michael Hegselmann, Stefan Neuhaus, Philipp Dugas, Martin Clin Epidemiol Original Research OBJECTIVE: Best-practice data models harmonize semantics and data structure of medical variables in clinical or epidemiological studies. While there exist several published data sets, it remains challenging to find and reuse published eligibility criteria or other data items that match specific needs of a newly planned study or registry. A novel Internet-based method for rapid comparison of published data models was implemented to enable reuse, customization, and harmonization of item catalogs for the early planning and development phase of research databases. METHODS: Based on prior work, a European information infrastructure with a large collection of medical data models was established. A newly developed analysis module called CDEGenerator provides systematic comparison of selected data models and user-tailored creation of minimum data sets or harmonized item catalogs. Usability was assessed by eight external medical documentation experts in a workshop by the umbrella organization for networked medical research in Germany with the System Usability Scale. RESULTS: The analysis and item-tailoring module provides multilingual comparisons of semantically complex eligibility criteria of clinical trials. The System Usability Scale yielded “good usability” (mean 75.0, range 65.0–92.5). User-tailored models can be exported to several data formats, such as XLS, REDCap or Operational Data Model by the Clinical Data Interchange Standards Consortium, which is supported by the US Food and Drug Administration and European Medicines Agency for metadata exchange of clinical studies. CONCLUSION: The online tool provides user-friendly methods to reuse, compare, and thus learn from data items of standardized or published models to design a blueprint for a harmonized research database. Dove Medical Press 2018-08-10 /pmc/articles/PMC6089100/ /pubmed/30127646 http://dx.doi.org/10.2147/CLEP.S170075 Text en © 2018 Varghese et al. This work is published and licensed by Dove Medical Press Limited The full terms of this license are available at https://www.dovepress.com/terms.php and incorporate the Creative Commons Attribution – Non Commercial (unported, v3.0) License (http://creativecommons.org/licenses/by-nc/3.0/). By accessing the work you hereby accept the Terms. Non-commercial uses of the ork are permitted without any further permission from Dove Medical Press Limited, provided the work is properly attributed.
spellingShingle Original Research
Varghese, Julian
Fujarski, Michael
Hegselmann, Stefan
Neuhaus, Philipp
Dugas, Martin
CDEGenerator: an online platform to learn from existing data models to build model registries
title CDEGenerator: an online platform to learn from existing data models to build model registries
title_full CDEGenerator: an online platform to learn from existing data models to build model registries
title_fullStr CDEGenerator: an online platform to learn from existing data models to build model registries
title_full_unstemmed CDEGenerator: an online platform to learn from existing data models to build model registries
title_short CDEGenerator: an online platform to learn from existing data models to build model registries
title_sort cdegenerator: an online platform to learn from existing data models to build model registries
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6089100/
https://www.ncbi.nlm.nih.gov/pubmed/30127646
http://dx.doi.org/10.2147/CLEP.S170075
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