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Genome-wide identification and characterization of non-specific lipid transfer proteins in cabbage

Plant non-specific lipid transfer proteins (nsLTPs) are a group of small, secreted proteins that can reversibly bind and transport hydrophobic molecules. NsLTPs play an important role in plant development and resistance to stress. To date, little is known about the nsLTP family in cabbage. In this s...

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Autores principales: Ji, Jialei, Lv, Honghao, Yang, Limei, Fang, Zhiyuan, Zhuang, Mu, Zhang, Yangyong, Liu, Yumei, Li, Zhansheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6089208/
https://www.ncbi.nlm.nih.gov/pubmed/30128186
http://dx.doi.org/10.7717/peerj.5379
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author Ji, Jialei
Lv, Honghao
Yang, Limei
Fang, Zhiyuan
Zhuang, Mu
Zhang, Yangyong
Liu, Yumei
Li, Zhansheng
author_facet Ji, Jialei
Lv, Honghao
Yang, Limei
Fang, Zhiyuan
Zhuang, Mu
Zhang, Yangyong
Liu, Yumei
Li, Zhansheng
author_sort Ji, Jialei
collection PubMed
description Plant non-specific lipid transfer proteins (nsLTPs) are a group of small, secreted proteins that can reversibly bind and transport hydrophobic molecules. NsLTPs play an important role in plant development and resistance to stress. To date, little is known about the nsLTP family in cabbage. In this study, a total of 89 nsLTP genes were identified via comprehensive research on the cabbage genome. These cabbage nsLTPs were classified into six types (1, 2, C, D, E and G). The gene structure, physical and chemical characteristics, homology, conserved motifs, subcellular localization, tertiary structure and phylogeny of the cabbage nsLTPs were comprehensively investigated. Spatial expression analysis revealed that most of the identified nsLTP genes were positively expressed in cabbage, and many of them exhibited patterns of differential and tissue-specific expression. The expression patterns of the nsLTP genes in response to biotic and abiotic stresses were also investigated. Numerous nsLTP genes in cabbage were found to be related to the resistance to stress. Moreover, the expression patterns of some nsLTP paralogs in cabbage showed evident divergence. This study promotes the understanding of nsLTPs characteristics in cabbage and lays the foundation for further functional studies investigating cabbage nsLTPs.
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spelling pubmed-60892082018-08-20 Genome-wide identification and characterization of non-specific lipid transfer proteins in cabbage Ji, Jialei Lv, Honghao Yang, Limei Fang, Zhiyuan Zhuang, Mu Zhang, Yangyong Liu, Yumei Li, Zhansheng PeerJ Agricultural Science Plant non-specific lipid transfer proteins (nsLTPs) are a group of small, secreted proteins that can reversibly bind and transport hydrophobic molecules. NsLTPs play an important role in plant development and resistance to stress. To date, little is known about the nsLTP family in cabbage. In this study, a total of 89 nsLTP genes were identified via comprehensive research on the cabbage genome. These cabbage nsLTPs were classified into six types (1, 2, C, D, E and G). The gene structure, physical and chemical characteristics, homology, conserved motifs, subcellular localization, tertiary structure and phylogeny of the cabbage nsLTPs were comprehensively investigated. Spatial expression analysis revealed that most of the identified nsLTP genes were positively expressed in cabbage, and many of them exhibited patterns of differential and tissue-specific expression. The expression patterns of the nsLTP genes in response to biotic and abiotic stresses were also investigated. Numerous nsLTP genes in cabbage were found to be related to the resistance to stress. Moreover, the expression patterns of some nsLTP paralogs in cabbage showed evident divergence. This study promotes the understanding of nsLTPs characteristics in cabbage and lays the foundation for further functional studies investigating cabbage nsLTPs. PeerJ Inc. 2018-08-10 /pmc/articles/PMC6089208/ /pubmed/30128186 http://dx.doi.org/10.7717/peerj.5379 Text en © 2018 Ji et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Agricultural Science
Ji, Jialei
Lv, Honghao
Yang, Limei
Fang, Zhiyuan
Zhuang, Mu
Zhang, Yangyong
Liu, Yumei
Li, Zhansheng
Genome-wide identification and characterization of non-specific lipid transfer proteins in cabbage
title Genome-wide identification and characterization of non-specific lipid transfer proteins in cabbage
title_full Genome-wide identification and characterization of non-specific lipid transfer proteins in cabbage
title_fullStr Genome-wide identification and characterization of non-specific lipid transfer proteins in cabbage
title_full_unstemmed Genome-wide identification and characterization of non-specific lipid transfer proteins in cabbage
title_short Genome-wide identification and characterization of non-specific lipid transfer proteins in cabbage
title_sort genome-wide identification and characterization of non-specific lipid transfer proteins in cabbage
topic Agricultural Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6089208/
https://www.ncbi.nlm.nih.gov/pubmed/30128186
http://dx.doi.org/10.7717/peerj.5379
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