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Genome-wide identification and characterization of non-specific lipid transfer proteins in cabbage
Plant non-specific lipid transfer proteins (nsLTPs) are a group of small, secreted proteins that can reversibly bind and transport hydrophobic molecules. NsLTPs play an important role in plant development and resistance to stress. To date, little is known about the nsLTP family in cabbage. In this s...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6089208/ https://www.ncbi.nlm.nih.gov/pubmed/30128186 http://dx.doi.org/10.7717/peerj.5379 |
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author | Ji, Jialei Lv, Honghao Yang, Limei Fang, Zhiyuan Zhuang, Mu Zhang, Yangyong Liu, Yumei Li, Zhansheng |
author_facet | Ji, Jialei Lv, Honghao Yang, Limei Fang, Zhiyuan Zhuang, Mu Zhang, Yangyong Liu, Yumei Li, Zhansheng |
author_sort | Ji, Jialei |
collection | PubMed |
description | Plant non-specific lipid transfer proteins (nsLTPs) are a group of small, secreted proteins that can reversibly bind and transport hydrophobic molecules. NsLTPs play an important role in plant development and resistance to stress. To date, little is known about the nsLTP family in cabbage. In this study, a total of 89 nsLTP genes were identified via comprehensive research on the cabbage genome. These cabbage nsLTPs were classified into six types (1, 2, C, D, E and G). The gene structure, physical and chemical characteristics, homology, conserved motifs, subcellular localization, tertiary structure and phylogeny of the cabbage nsLTPs were comprehensively investigated. Spatial expression analysis revealed that most of the identified nsLTP genes were positively expressed in cabbage, and many of them exhibited patterns of differential and tissue-specific expression. The expression patterns of the nsLTP genes in response to biotic and abiotic stresses were also investigated. Numerous nsLTP genes in cabbage were found to be related to the resistance to stress. Moreover, the expression patterns of some nsLTP paralogs in cabbage showed evident divergence. This study promotes the understanding of nsLTPs characteristics in cabbage and lays the foundation for further functional studies investigating cabbage nsLTPs. |
format | Online Article Text |
id | pubmed-6089208 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-60892082018-08-20 Genome-wide identification and characterization of non-specific lipid transfer proteins in cabbage Ji, Jialei Lv, Honghao Yang, Limei Fang, Zhiyuan Zhuang, Mu Zhang, Yangyong Liu, Yumei Li, Zhansheng PeerJ Agricultural Science Plant non-specific lipid transfer proteins (nsLTPs) are a group of small, secreted proteins that can reversibly bind and transport hydrophobic molecules. NsLTPs play an important role in plant development and resistance to stress. To date, little is known about the nsLTP family in cabbage. In this study, a total of 89 nsLTP genes were identified via comprehensive research on the cabbage genome. These cabbage nsLTPs were classified into six types (1, 2, C, D, E and G). The gene structure, physical and chemical characteristics, homology, conserved motifs, subcellular localization, tertiary structure and phylogeny of the cabbage nsLTPs were comprehensively investigated. Spatial expression analysis revealed that most of the identified nsLTP genes were positively expressed in cabbage, and many of them exhibited patterns of differential and tissue-specific expression. The expression patterns of the nsLTP genes in response to biotic and abiotic stresses were also investigated. Numerous nsLTP genes in cabbage were found to be related to the resistance to stress. Moreover, the expression patterns of some nsLTP paralogs in cabbage showed evident divergence. This study promotes the understanding of nsLTPs characteristics in cabbage and lays the foundation for further functional studies investigating cabbage nsLTPs. PeerJ Inc. 2018-08-10 /pmc/articles/PMC6089208/ /pubmed/30128186 http://dx.doi.org/10.7717/peerj.5379 Text en © 2018 Ji et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Agricultural Science Ji, Jialei Lv, Honghao Yang, Limei Fang, Zhiyuan Zhuang, Mu Zhang, Yangyong Liu, Yumei Li, Zhansheng Genome-wide identification and characterization of non-specific lipid transfer proteins in cabbage |
title | Genome-wide identification and characterization of non-specific lipid transfer proteins in cabbage |
title_full | Genome-wide identification and characterization of non-specific lipid transfer proteins in cabbage |
title_fullStr | Genome-wide identification and characterization of non-specific lipid transfer proteins in cabbage |
title_full_unstemmed | Genome-wide identification and characterization of non-specific lipid transfer proteins in cabbage |
title_short | Genome-wide identification and characterization of non-specific lipid transfer proteins in cabbage |
title_sort | genome-wide identification and characterization of non-specific lipid transfer proteins in cabbage |
topic | Agricultural Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6089208/ https://www.ncbi.nlm.nih.gov/pubmed/30128186 http://dx.doi.org/10.7717/peerj.5379 |
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