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Novel Variants Identified in Multiple Sclerosis Patients From Southern China
Background: Multiple sclerosis (MS) is an autoimmune and demyelinating disease. Genome-wide association studies have shown that MS is associated with many genetic variants in some human leucocyte antigen genes and other immune-related genes, however, those studies were mostly specific to Caucasian p...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6094994/ https://www.ncbi.nlm.nih.gov/pubmed/30140248 http://dx.doi.org/10.3389/fneur.2018.00582 |
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author | Wang, Hongxuan Pardeshi, Lakhansing Arun Rong, Xiaoming Li, Enqin Wong, Koon Ho Peng, Ying Xu, Ren-He |
author_facet | Wang, Hongxuan Pardeshi, Lakhansing Arun Rong, Xiaoming Li, Enqin Wong, Koon Ho Peng, Ying Xu, Ren-He |
author_sort | Wang, Hongxuan |
collection | PubMed |
description | Background: Multiple sclerosis (MS) is an autoimmune and demyelinating disease. Genome-wide association studies have shown that MS is associated with many genetic variants in some human leucocyte antigen genes and other immune-related genes, however, those studies were mostly specific to Caucasian populations. We attempt to address whether the same associations are also true for Asian populations by conducting whole-exome sequencing on MS patients from southern China. Methods: Genomic DNA was extracted from the peripheral blood mononucleocytes of 8 MS patients and 26 healthy controls and followed by exome sequencing. Results: In total, 41,227 variants were found to have moderate to high impact on their protein products. After filtering per allele frequencies according to known database, 17 variants with the allele frequency <1% or variants with undetermined frequency were identified to be unreported and have significantly different frequencies between the MS patients and healthy controls. After validation via Sanger sequencing, one rare variant located in exon 7 of TRIOBP (Chr22: 37723520G>T, Ala322Ser, rs201693690) was found to be a novel missense variant. Conclusion: MS in southern China may have association with unique genetic variants, our data suggest TRIOBP as a potential novel risk gene. |
format | Online Article Text |
id | pubmed-6094994 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-60949942018-08-23 Novel Variants Identified in Multiple Sclerosis Patients From Southern China Wang, Hongxuan Pardeshi, Lakhansing Arun Rong, Xiaoming Li, Enqin Wong, Koon Ho Peng, Ying Xu, Ren-He Front Neurol Neurology Background: Multiple sclerosis (MS) is an autoimmune and demyelinating disease. Genome-wide association studies have shown that MS is associated with many genetic variants in some human leucocyte antigen genes and other immune-related genes, however, those studies were mostly specific to Caucasian populations. We attempt to address whether the same associations are also true for Asian populations by conducting whole-exome sequencing on MS patients from southern China. Methods: Genomic DNA was extracted from the peripheral blood mononucleocytes of 8 MS patients and 26 healthy controls and followed by exome sequencing. Results: In total, 41,227 variants were found to have moderate to high impact on their protein products. After filtering per allele frequencies according to known database, 17 variants with the allele frequency <1% or variants with undetermined frequency were identified to be unreported and have significantly different frequencies between the MS patients and healthy controls. After validation via Sanger sequencing, one rare variant located in exon 7 of TRIOBP (Chr22: 37723520G>T, Ala322Ser, rs201693690) was found to be a novel missense variant. Conclusion: MS in southern China may have association with unique genetic variants, our data suggest TRIOBP as a potential novel risk gene. Frontiers Media S.A. 2018-07-25 /pmc/articles/PMC6094994/ /pubmed/30140248 http://dx.doi.org/10.3389/fneur.2018.00582 Text en Copyright © 2018 Wang, Pardeshi, Rong, Li, Wong, Peng and Xu. http://creativecommons.org/licenses/by/4.0/ This is an openaccess article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neurology Wang, Hongxuan Pardeshi, Lakhansing Arun Rong, Xiaoming Li, Enqin Wong, Koon Ho Peng, Ying Xu, Ren-He Novel Variants Identified in Multiple Sclerosis Patients From Southern China |
title | Novel Variants Identified in Multiple Sclerosis Patients From Southern China |
title_full | Novel Variants Identified in Multiple Sclerosis Patients From Southern China |
title_fullStr | Novel Variants Identified in Multiple Sclerosis Patients From Southern China |
title_full_unstemmed | Novel Variants Identified in Multiple Sclerosis Patients From Southern China |
title_short | Novel Variants Identified in Multiple Sclerosis Patients From Southern China |
title_sort | novel variants identified in multiple sclerosis patients from southern china |
topic | Neurology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6094994/ https://www.ncbi.nlm.nih.gov/pubmed/30140248 http://dx.doi.org/10.3389/fneur.2018.00582 |
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