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Novel Variants Identified in Multiple Sclerosis Patients From Southern China

Background: Multiple sclerosis (MS) is an autoimmune and demyelinating disease. Genome-wide association studies have shown that MS is associated with many genetic variants in some human leucocyte antigen genes and other immune-related genes, however, those studies were mostly specific to Caucasian p...

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Autores principales: Wang, Hongxuan, Pardeshi, Lakhansing Arun, Rong, Xiaoming, Li, Enqin, Wong, Koon Ho, Peng, Ying, Xu, Ren-He
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6094994/
https://www.ncbi.nlm.nih.gov/pubmed/30140248
http://dx.doi.org/10.3389/fneur.2018.00582
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author Wang, Hongxuan
Pardeshi, Lakhansing Arun
Rong, Xiaoming
Li, Enqin
Wong, Koon Ho
Peng, Ying
Xu, Ren-He
author_facet Wang, Hongxuan
Pardeshi, Lakhansing Arun
Rong, Xiaoming
Li, Enqin
Wong, Koon Ho
Peng, Ying
Xu, Ren-He
author_sort Wang, Hongxuan
collection PubMed
description Background: Multiple sclerosis (MS) is an autoimmune and demyelinating disease. Genome-wide association studies have shown that MS is associated with many genetic variants in some human leucocyte antigen genes and other immune-related genes, however, those studies were mostly specific to Caucasian populations. We attempt to address whether the same associations are also true for Asian populations by conducting whole-exome sequencing on MS patients from southern China. Methods: Genomic DNA was extracted from the peripheral blood mononucleocytes of 8 MS patients and 26 healthy controls and followed by exome sequencing. Results: In total, 41,227 variants were found to have moderate to high impact on their protein products. After filtering per allele frequencies according to known database, 17 variants with the allele frequency <1% or variants with undetermined frequency were identified to be unreported and have significantly different frequencies between the MS patients and healthy controls. After validation via Sanger sequencing, one rare variant located in exon 7 of TRIOBP (Chr22: 37723520G>T, Ala322Ser, rs201693690) was found to be a novel missense variant. Conclusion: MS in southern China may have association with unique genetic variants, our data suggest TRIOBP as a potential novel risk gene.
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spelling pubmed-60949942018-08-23 Novel Variants Identified in Multiple Sclerosis Patients From Southern China Wang, Hongxuan Pardeshi, Lakhansing Arun Rong, Xiaoming Li, Enqin Wong, Koon Ho Peng, Ying Xu, Ren-He Front Neurol Neurology Background: Multiple sclerosis (MS) is an autoimmune and demyelinating disease. Genome-wide association studies have shown that MS is associated with many genetic variants in some human leucocyte antigen genes and other immune-related genes, however, those studies were mostly specific to Caucasian populations. We attempt to address whether the same associations are also true for Asian populations by conducting whole-exome sequencing on MS patients from southern China. Methods: Genomic DNA was extracted from the peripheral blood mononucleocytes of 8 MS patients and 26 healthy controls and followed by exome sequencing. Results: In total, 41,227 variants were found to have moderate to high impact on their protein products. After filtering per allele frequencies according to known database, 17 variants with the allele frequency <1% or variants with undetermined frequency were identified to be unreported and have significantly different frequencies between the MS patients and healthy controls. After validation via Sanger sequencing, one rare variant located in exon 7 of TRIOBP (Chr22: 37723520G>T, Ala322Ser, rs201693690) was found to be a novel missense variant. Conclusion: MS in southern China may have association with unique genetic variants, our data suggest TRIOBP as a potential novel risk gene. Frontiers Media S.A. 2018-07-25 /pmc/articles/PMC6094994/ /pubmed/30140248 http://dx.doi.org/10.3389/fneur.2018.00582 Text en Copyright © 2018 Wang, Pardeshi, Rong, Li, Wong, Peng and Xu. http://creativecommons.org/licenses/by/4.0/ This is an openaccess article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neurology
Wang, Hongxuan
Pardeshi, Lakhansing Arun
Rong, Xiaoming
Li, Enqin
Wong, Koon Ho
Peng, Ying
Xu, Ren-He
Novel Variants Identified in Multiple Sclerosis Patients From Southern China
title Novel Variants Identified in Multiple Sclerosis Patients From Southern China
title_full Novel Variants Identified in Multiple Sclerosis Patients From Southern China
title_fullStr Novel Variants Identified in Multiple Sclerosis Patients From Southern China
title_full_unstemmed Novel Variants Identified in Multiple Sclerosis Patients From Southern China
title_short Novel Variants Identified in Multiple Sclerosis Patients From Southern China
title_sort novel variants identified in multiple sclerosis patients from southern china
topic Neurology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6094994/
https://www.ncbi.nlm.nih.gov/pubmed/30140248
http://dx.doi.org/10.3389/fneur.2018.00582
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