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Functional Expression and Characterization of Tetrachloroethene Dehalogenase From Geobacter sp.
Reductive dehalogenase (RDase) consists of two parts, RdhA and RdhB. RdhA is the catalytic subunit, harboring a cobalamin cofactor and two Fe–S clusters. RdhA is anchored to the cytoplasmic membrane via the membrane anchoring subunit, RdhB. There are many genes encoding RDases in the genome of organ...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2018
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6095959/ https://www.ncbi.nlm.nih.gov/pubmed/30147676 http://dx.doi.org/10.3389/fmicb.2018.01774 |
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author | Nakamura, Ryuki Obata, Tomohiro Nojima, Ryota Hashimoto, Yohey Noguchi, Keiichi Ogawa, Takahiro Yohda, Masafumi |
author_facet | Nakamura, Ryuki Obata, Tomohiro Nojima, Ryota Hashimoto, Yohey Noguchi, Keiichi Ogawa, Takahiro Yohda, Masafumi |
author_sort | Nakamura, Ryuki |
collection | PubMed |
description | Reductive dehalogenase (RDase) consists of two parts, RdhA and RdhB. RdhA is the catalytic subunit, harboring a cobalamin cofactor and two Fe–S clusters. RdhA is anchored to the cytoplasmic membrane via the membrane anchoring subunit, RdhB. There are many genes encoding RDases in the genome of organohalide-respiring bacteria, including Dehalococcoides spp. However, most genes have not been functionally characterized. Biochemical studies on RDases have been hampered by difficulties encountered in their expression and purification. In this study, we have expressed, purified and characterized RdhA of RDase for tetrachloroethene (PceA) from Geobacter sp. PceA was expressed as a fusion protein with a trigger factor tag in Escherichia coli. PceA was purified and denatured in aerobic condition. Subsequently, this protein was refolded in the presence of FeCl(3), Na(2)S and cobalamin in anaerobic condition. The reconstituted PceA exhibited dechlorination ability for tetrachloroethene. UV-Vis spectroscopy has shown that it contains cobalamin and Fe-S clusters. Since this method requires anaerobic manipulation only in the reconstituting process and has a relatively high yield, it will enable further biochemical studies of RDases. |
format | Online Article Text |
id | pubmed-6095959 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-60959592018-08-24 Functional Expression and Characterization of Tetrachloroethene Dehalogenase From Geobacter sp. Nakamura, Ryuki Obata, Tomohiro Nojima, Ryota Hashimoto, Yohey Noguchi, Keiichi Ogawa, Takahiro Yohda, Masafumi Front Microbiol Microbiology Reductive dehalogenase (RDase) consists of two parts, RdhA and RdhB. RdhA is the catalytic subunit, harboring a cobalamin cofactor and two Fe–S clusters. RdhA is anchored to the cytoplasmic membrane via the membrane anchoring subunit, RdhB. There are many genes encoding RDases in the genome of organohalide-respiring bacteria, including Dehalococcoides spp. However, most genes have not been functionally characterized. Biochemical studies on RDases have been hampered by difficulties encountered in their expression and purification. In this study, we have expressed, purified and characterized RdhA of RDase for tetrachloroethene (PceA) from Geobacter sp. PceA was expressed as a fusion protein with a trigger factor tag in Escherichia coli. PceA was purified and denatured in aerobic condition. Subsequently, this protein was refolded in the presence of FeCl(3), Na(2)S and cobalamin in anaerobic condition. The reconstituted PceA exhibited dechlorination ability for tetrachloroethene. UV-Vis spectroscopy has shown that it contains cobalamin and Fe-S clusters. Since this method requires anaerobic manipulation only in the reconstituting process and has a relatively high yield, it will enable further biochemical studies of RDases. Frontiers Media S.A. 2018-08-10 /pmc/articles/PMC6095959/ /pubmed/30147676 http://dx.doi.org/10.3389/fmicb.2018.01774 Text en Copyright © 2018 Nakamura, Obata, Nojima, Hashimoto, Noguchi, Ogawa and Yohda. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Microbiology Nakamura, Ryuki Obata, Tomohiro Nojima, Ryota Hashimoto, Yohey Noguchi, Keiichi Ogawa, Takahiro Yohda, Masafumi Functional Expression and Characterization of Tetrachloroethene Dehalogenase From Geobacter sp. |
title | Functional Expression and Characterization of Tetrachloroethene Dehalogenase From Geobacter sp. |
title_full | Functional Expression and Characterization of Tetrachloroethene Dehalogenase From Geobacter sp. |
title_fullStr | Functional Expression and Characterization of Tetrachloroethene Dehalogenase From Geobacter sp. |
title_full_unstemmed | Functional Expression and Characterization of Tetrachloroethene Dehalogenase From Geobacter sp. |
title_short | Functional Expression and Characterization of Tetrachloroethene Dehalogenase From Geobacter sp. |
title_sort | functional expression and characterization of tetrachloroethene dehalogenase from geobacter sp. |
topic | Microbiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6095959/ https://www.ncbi.nlm.nih.gov/pubmed/30147676 http://dx.doi.org/10.3389/fmicb.2018.01774 |
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