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High-Throughput Screening Approach for Nanoporous Materials Genome Using Topological Data Analysis: Application to Zeolites

[Image: see text] The materials genome initiative has led to the creation of a large (over a million) database of different classes of nanoporous materials. As the number of hypothetical materials that can, in principle, be experimentally synthesized is infinite, a bottleneck in the use of these dat...

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Autores principales: Lee, Yongjin, Barthel, Senja D., Dłotko, Paweł, Moosavi, Seyed Mohamad, Hess, Kathryn, Smit, Berend
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2018
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6096454/
https://www.ncbi.nlm.nih.gov/pubmed/29986145
http://dx.doi.org/10.1021/acs.jctc.8b00253
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author Lee, Yongjin
Barthel, Senja D.
Dłotko, Paweł
Moosavi, Seyed Mohamad
Hess, Kathryn
Smit, Berend
author_facet Lee, Yongjin
Barthel, Senja D.
Dłotko, Paweł
Moosavi, Seyed Mohamad
Hess, Kathryn
Smit, Berend
author_sort Lee, Yongjin
collection PubMed
description [Image: see text] The materials genome initiative has led to the creation of a large (over a million) database of different classes of nanoporous materials. As the number of hypothetical materials that can, in principle, be experimentally synthesized is infinite, a bottleneck in the use of these databases for the discovery of novel materials is the lack of efficient computational tools to analyze them. Current approaches use brute-force molecular simulations to generate thermodynamic data needed to predict the performance of these materials in different applications, but this approach is limited to the analysis of tens of thousands of structures due to computational intractability. As such, it is conceivable and even likely that the best nanoporous materials for any given application have yet to be discovered both experimentally and theoretically. In this article, we seek a computational approach to tackle this issue by transitioning away from brute-force characterization to high-throughput screening methods based on big-data analysis, using the zeolite database as an example. For identifying and comparing zeolites, we used a topological data analysis-based descriptor (TD) recognizing pore shapes. For methane storage and carbon capture applications, our analyses seeking pairs of highly similar zeolites discovered good correlations between performance properties of a seed zeolite and the corresponding pair, which demonstrates the capability of TD to predict performance properties. It was also shown that when some top zeolites are known, TD can be used to detect other high-performing materials as their neighbors with high probability. Finally, we performed high-throughput screening of zeolites based on TD. For methane storage (or carbon capture) applications, the promising sets from our screenings contained high-percentages of top-performing zeolites: 45% (or 23%) of the top 1% zeolites in the entire set. This result shows that our screening approach using TD is highly efficient in finding high-performing materials. We expect that this approach could easily be extended to other applications by simply adjusting one parameter, the size of the target gas molecule.
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spelling pubmed-60964542018-08-20 High-Throughput Screening Approach for Nanoporous Materials Genome Using Topological Data Analysis: Application to Zeolites Lee, Yongjin Barthel, Senja D. Dłotko, Paweł Moosavi, Seyed Mohamad Hess, Kathryn Smit, Berend J Chem Theory Comput [Image: see text] The materials genome initiative has led to the creation of a large (over a million) database of different classes of nanoporous materials. As the number of hypothetical materials that can, in principle, be experimentally synthesized is infinite, a bottleneck in the use of these databases for the discovery of novel materials is the lack of efficient computational tools to analyze them. Current approaches use brute-force molecular simulations to generate thermodynamic data needed to predict the performance of these materials in different applications, but this approach is limited to the analysis of tens of thousands of structures due to computational intractability. As such, it is conceivable and even likely that the best nanoporous materials for any given application have yet to be discovered both experimentally and theoretically. In this article, we seek a computational approach to tackle this issue by transitioning away from brute-force characterization to high-throughput screening methods based on big-data analysis, using the zeolite database as an example. For identifying and comparing zeolites, we used a topological data analysis-based descriptor (TD) recognizing pore shapes. For methane storage and carbon capture applications, our analyses seeking pairs of highly similar zeolites discovered good correlations between performance properties of a seed zeolite and the corresponding pair, which demonstrates the capability of TD to predict performance properties. It was also shown that when some top zeolites are known, TD can be used to detect other high-performing materials as their neighbors with high probability. Finally, we performed high-throughput screening of zeolites based on TD. For methane storage (or carbon capture) applications, the promising sets from our screenings contained high-percentages of top-performing zeolites: 45% (or 23%) of the top 1% zeolites in the entire set. This result shows that our screening approach using TD is highly efficient in finding high-performing materials. We expect that this approach could easily be extended to other applications by simply adjusting one parameter, the size of the target gas molecule. American Chemical Society 2018-07-09 2018-08-14 /pmc/articles/PMC6096454/ /pubmed/29986145 http://dx.doi.org/10.1021/acs.jctc.8b00253 Text en Copyright © 2018 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes.
spellingShingle Lee, Yongjin
Barthel, Senja D.
Dłotko, Paweł
Moosavi, Seyed Mohamad
Hess, Kathryn
Smit, Berend
High-Throughput Screening Approach for Nanoporous Materials Genome Using Topological Data Analysis: Application to Zeolites
title High-Throughput Screening Approach for Nanoporous Materials Genome Using Topological Data Analysis: Application to Zeolites
title_full High-Throughput Screening Approach for Nanoporous Materials Genome Using Topological Data Analysis: Application to Zeolites
title_fullStr High-Throughput Screening Approach for Nanoporous Materials Genome Using Topological Data Analysis: Application to Zeolites
title_full_unstemmed High-Throughput Screening Approach for Nanoporous Materials Genome Using Topological Data Analysis: Application to Zeolites
title_short High-Throughput Screening Approach for Nanoporous Materials Genome Using Topological Data Analysis: Application to Zeolites
title_sort high-throughput screening approach for nanoporous materials genome using topological data analysis: application to zeolites
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6096454/
https://www.ncbi.nlm.nih.gov/pubmed/29986145
http://dx.doi.org/10.1021/acs.jctc.8b00253
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